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CHSY1 chondroitin sulfate synthase 1 [ Bos taurus (domestic cattle) ]

Gene ID: 281690, updated on 26-Mar-2025
Official Symbol
CHSY1provided by VGNC
Official Full Name
chondroitin sulfate synthase 1provided by VGNC
Primary source
VGNC:VGNC:27350
See related
BGD:BT26179; EnsemblRapid:ENSBTAG00070006735
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See CHSY1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (5285464..5375159)

Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343323 Neighboring gene selenoprotein S Neighboring gene uncharacterized LOC112443221 Neighboring gene leucine rich repeat kinase 1 Neighboring gene microRNA mir-2362

Genomic Sequence:
NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
chondroitin sulfate synthase 1
Names
carbohydrate (chondroitin) synthase 1
NP_001178086.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191157.1 → NP_001178086.1  chondroitin sulfate synthase 1 precursor

    See identical proteins and their annotated locations for NP_001178086.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000021
    UniProtKB/TrEMBL
    F6PU96
    Related
    ENSBTAP00070008733.1, ENSBTAT00070015311.1
    Conserved Domains (2) summary
    pfam05679
    Location:239 → 778
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:88 → 309
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    5285464..5375159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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