CCL20 C-C motif chemokine ligand 20 [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: CCL20provided by VGNC
Official Full Name: C-C motif chemokine ligand 20provided by VGNC
Primary source: VGNC:VGNC:26947
See related: BGD:BT12206; EnsemblRapid:ENSBTAG00070010458
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_12	current	ARS-UCD2.0 (GCF_002263795.3)	2	NC_037329.1 (115948072..115951638)

Chromosome 2 - NC_037329.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Dominette sequence data
BioProject: PRJNA294306
Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables chemokine activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in immune response	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: C-C motif chemokine 20

Names: MIP-3-alpha; chemokine (C-C motif) ligand 20; macrophage inflammatory protein 3 alpha; small-inducible cytokine A20

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_174263.2 → NP_776688.1 C-C motif chemokine 20 precursor

See identical proteins and their annotated locations for NP_776688.1

Status: PROVISIONAL

Source sequence(s)

AY061959

UniProtKB/Swiss-Prot

Q8SQB1

Conserved Domains (1) summary

cl00134
Location:30 → 90

Chemokine; Chemokine: small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided ...

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

Range

115948072..115951638

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005202887.5 → XP_005202944.1 C-C motif chemokine 20 isoform X1

UniProtKB/TrEMBL

A0AAF6Z967

Related

ENSBTAP00070013800.1, ENSBTAT00070023385.1

Conserved Domains (1) summary

cl00134
Location:31 → 91

Chemokine; Chemokine: small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided ...