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UBB ubiquitin B [ Bos taurus (domestic cattle) ]

Gene ID: 281370, updated on 4-Oct-2024

Summary

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Official Symbol
UBBprovided by VGNC
Official Full Name
ubiquitin Bprovided by VGNC
Primary source
VGNC:VGNC:107281
See related
BGD:BT13380; Ensembl:ENSBTAG00000017246
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See UBB in Genome Data Viewer
Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (33249950..33251856, complement)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD49 Neighboring gene transient receptor potential cation channel subfamily V member 2 Neighboring gene uncharacterized LOC101907886 Neighboring gene enhancer of rudimentary homolog pseudogene Neighboring gene centromere protein V Neighboring gene phosphatidylinositol glycan anchor biosynthesis class L

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of a full-length cDNA encoding a bovine four tandem-repeat ubiquitin. Wempe F, et al. Biochim Biophys Acta, 1993 Feb 20. PMID 8382528
  2. Ganglioside binding proteins of calf brain with ubiquitin-like N-terminals. Zdebska E, et al. Eur J Biochem, 1992 Dec 1. PMID 1333954
  3. Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting. Hirano S, et al. Nat Struct Mol Biol, 2006 Mar. PMID 16462748
  4. Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain. Akutsu M, et al. FEBS Lett, 2005 Oct 10. PMID 16199040
  5. The biosynthesis of ubiquitin by parathyroid gland. Hamilton JW, et al. Biochem Biophys Res Commun, 1980 Sep 16. PMID 6254502

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyubiquitin-B
Names
polyubiquitin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174133.2 → NP_776558.1  polyubiquitin-B

    See identical proteins and their annotated locations for NP_776558.1

    Status: PROVISIONAL

    Source sequence(s)
    Z18245
    UniProtKB/Swiss-Prot
    P0CG53
    Related
    ENSBTAP00000022919.2, ENSBTAT00000022919.4
    Conserved Domains (2) summary
    cd01803
    Location:153 → 228
    Ubiquitin; Ubiquitin
    smart00213
    Location:1 → 72
    UBQ; Ubiquitin homologues

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    33249950..33251856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059877709.1 → XP_059733692.1  polyubiquitin-B isoform X1

    UniProtKB/Swiss-Prot
    P0CG53

  2. XM_059877708.1 → XP_059733691.1  polyubiquitin-B isoform X1

    UniProtKB/Swiss-Prot
    P0CG53
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CG53.1 GenPept UniProtKB/Swiss-Prot:P0CG53

Gene LinkOut

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