Nopchap1 NOP protein chaperone 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Nopchap1provided by MGI
Official Full Name: NOP protein chaperone 1provided by MGI
Primary source: MGI:MGI:106381
See related: Ensembl:ENSMUSG00000020255 AllianceGenome:MGI:106381
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: D10Wsu102e; C430041I18Rik
Summary: Predicted to enable box C/D snoRNP complex binding activity. Predicted to be involved in box C/D snoRNP assembly. Predicted to be located in nucleus. Is expressed in pancreas epithelium. Orthologous to human NOPCHAP1 (NOP protein chaperone 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in placenta adult (RPKM 7.4), CNS E11.5 (RPKM 6.7) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 10 C1; 10 41.16 cM

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
109	current	GRCm39 (GCF_000001635.27)	10	NC_000076.7 (83196085..83204699)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	10	NC_000076.6 (83360221..83368835)

Chromosome 10 - NC_000076.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

NoName (e-PCR)
- UniSTS:493071

AI747614 (e-PCR)
- UniSTS:180088

NoName (e-PCR)
- UniSTS:236421

RH124620 (e-PCR)
- UniSTS:161442

D10Wsu102e (e-PCR), detects polymorphism
- UniSTS:527303

RH125706 (e-PCR)
- UniSTS:141523

Homology

Homologs of the Nopchap1 gene: The Nopchap1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, chicken, zebrafish, and frog.
Orthologs from Annotation Pipeline: 492 organisms have orthologs with human gene Nopchap1
Orthologs

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables box C/D snoRNP complex binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables box C/D snoRNP complex binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in box C/D snoRNP assembly	IBA Inferred from Biological aspect of Ancestor more info	PubMed
involved_in box C/D snoRNP assembly	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: NOP protein chaperone 1

Names: uncharacterized protein C12orf45 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.