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SSX9P SSX family member 9, pseudogene [ Homo sapiens (human) ]

Gene ID: 280660, updated on 11-Jun-2021

Summary

Official Symbol
SSX9Pprovided by HGNC
Official Full Name
SSX family member 9, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:19655
See related
Ensembl:ENSG00000204648 MIM:300544
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SSX9
Summary
The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneously humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. SSX1, SSX2 and SSX4 genes have been involved in the t(X;18) translocation characteristically found in all synovial sarcomas. This gene appears not to be involved in this type of chromosome translocation. [provided by RefSeq, Jul 2008]
Expression
Low expression observed in reference dataset See more
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Genomic context

See SSX9P in Genome Data Viewer
Location:
Xp11.23
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (48301550..48306179, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (48160985..48165614, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene SSX family member 5 pseudogene Neighboring gene ornithine aminotransferase pseudogene Neighboring gene SSX family pseudogene 8 Neighboring gene ornithine aminotransferase pseudogene Neighboring gene SSX family pseudogene 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • epididymis secretory sperm binding protein
  • synovial sarcoma, X breakpoint 7, pseudogene
  • synovial sarcoma, X breakpoint 9

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_073393.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL606490, DB029485
    Related
    ENST00000608568.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    48301550..48306179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_016812.1: Suppressed sequence

    Description
    NG_016812.1: This RefSeq was permanently suppressed because it is now thought that this gene is transcribed.
  2. NM_174962.3: Suppressed sequence

    Description
    NM_174962.3: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
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