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Lix1l Lix1-like [ Mus musculus (house mouse) ]

Gene ID: 280411, updated on 9-May-2024

Summary

Official Symbol
Lix1lprovided by MGI
Official Full Name
Lix1-likeprovided by MGI
Primary source
MGI:MGI:3036267
See related
Ensembl:ENSMUSG00000049288 AllianceGenome:MGI:3036267
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D130027M04Rik
Summary
Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Is expressed in genitourinary system. Orthologous to human LIX1L (limb and CNS expressed 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in limb E14.5 (RPKM 29.2), CNS E14 (RPKM 27.3) and 27 other tissues See more
Orthologs
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Genomic context

See Lix1l in Genome Data Viewer
Location:
3 F2.1; 3 41.93 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (96508449..96532668)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (96601133..96625352)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08441 Neighboring gene STARR-positive B cell enhancer ABC_E6083 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide G like Neighboring gene STARR-seq mESC enhancer starr_08442 Neighboring gene STARR-positive B cell enhancer ABC_E3451 Neighboring gene ankyrin repeat domain 34A Neighboring gene predicted gene, 52628 Neighboring gene RIKEN cDNA 6330549D23 gene Neighboring gene STARR-positive B cell enhancer ABC_E7929 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:96439383-96439492 Neighboring gene RNA binding motif protein 8a Neighboring gene peroxisomal biogenesis factor 11 beta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in autophagosome maturation IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163170.1NP_001156642.1  LIX1-like protein

    See identical proteins and their annotated locations for NP_001156642.1

    Status: VALIDATED

    Source sequence(s)
    AK051276, AK143438
    Consensus CDS
    CCDS51004.1
    UniProtKB/Swiss-Prot
    Q8BQ89
    UniProtKB/TrEMBL
    G3X9C8
    Related
    ENSMUSP00000057623.4, ENSMUST00000062058.5
    Conserved Domains (1) summary
    pfam14954
    Location:87328
    LIX1; Limb expression 1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    96508449..96532668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)