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Mrpl50 mitochondrial ribosomal protein L50 [ Mus musculus (house mouse) ]

Gene ID: 28028, updated on 5-Mar-2024

Summary

Official Symbol
Mrpl50provided by MGI
Official Full Name
mitochondrial ribosomal protein L50provided by MGI
Primary source
MGI:MGI:107329
See related
Ensembl:ENSMUSG00000044018 AllianceGenome:MGI:107329
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D4Wsu125e
Summary
Located in mitochondrion. Is expressed in several structures, including early conceptus; gonad; heart; liver; and metanephros. Orthologous to human MRPL50 (mitochondrial ribosomal protein L50). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E18 (RPKM 16.9), liver E14 (RPKM 14.7) and 22 other tissues See more
Orthologs
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Genomic context

See Mrpl50 in Genome Data Viewer
Location:
4 B1; 4 26.54 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (49512597..49521083, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (49512597..49521083, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32894 Neighboring gene bile acid-Coenzyme A: amino acid N-acyltransferase Neighboring gene predicted gene, 52736 Neighboring gene zinc finger protein 189 Neighboring gene aldolase B, fructose-bisphosphate

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in mitochondrial translation NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial inner membrane NAS
Non-traceable Author Statement
more info
PubMed 
part_of mitochondrial large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of mitochondrial large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
part_of mitochondrial large ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
located_in mitochondrion HDA PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
large ribosomal subunit protein mL50
Names
39S ribosomal protein L50, mitochondrial
L50mt
MRP-L50

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178603.4NP_848718.1  large ribosomal subunit protein mL50

    See identical proteins and their annotated locations for NP_848718.1

    Status: PROVISIONAL

    Source sequence(s)
    AL772310
    Consensus CDS
    CCDS18174.1
    UniProtKB/Swiss-Prot
    Q8VDT9, Q9CR44
    Related
    ENSMUSP00000062476.4, ENSMUST00000057829.4
    Conserved Domains (1) summary
    pfam10501
    Location:61155
    Ribosomal_L50; Ribosomal subunit 39S

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    49512597..49521083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)