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Efhd2 EF hand domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 27984, updated on 21-Oct-2018

Summary

Official Symbol
Efhd2provided by MGI
Official Full Name
EF hand domain containing 2provided by MGI
Primary source
MGI:MGI:106504
See related
Ensembl:ENSMUSG00000040659 Vega:OTTMUSG00000010040
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AA408606; D4Wsu27e; 2600015J22Rik
Expression
Ubiquitous expression in duodenum adult (RPKM 142.8), small intestine adult (RPKM 133.3) and 28 other tissues See more
Orthologs

Genomic context

See Efhd2 in Genome Data Viewer
Location:
4 E1; 4 74.75 cM
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (141858142..141874920, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (141414057..141430835, complement)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene caspase 9 Neighboring gene chymotrypsin-like elastase family, member 2A Neighboring gene uncharacterized LOC108168984 Neighboring gene chymotrypsin C (caldecrin) Neighboring gene chymotrypsin C (caldecrin), opposite strand Neighboring gene forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 2 Neighboring gene predicted gene, 46874 Neighboring gene forkhead-associated (FHA) phosphopeptide binding domain 1 Neighboring gene predicted gene, 42338

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
calcium ion binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
EF-hand domain-containing protein D2
Names
swiprosin-1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025994.3NP_080270.2  EF-hand domain-containing protein D2

    See identical proteins and their annotated locations for NP_080270.2

    Status: PROVISIONAL

    Source sequence(s)
    AK048475
    Consensus CDS
    CCDS18885.1
    UniProtKB/TrEMBL
    Q8C845
    Related
    ENSMUSP00000044502.3, OTTMUSP00000010681, ENSMUST00000036854.3, OTTMUST00000023362
    Conserved Domains (2) summary
    cd00051
    Location:96154
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:97154
    EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

    Range
    141858142..141874920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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