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DVU3334 sigma-54 dependent DNA-binding response regulator [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2796345, updated on 20-Aug-2016

Summary

Gene symbol
DVU3334
Gene description
sigma-54 dependent DNA-binding response regulator
Locus tag
DVU3334
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (3507257..3508606, complement)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene heavy metal translocating P-type ATPase Neighboring gene hypothetical protein Neighboring gene sensory box histidine kinase Neighboring gene potassium channel histidine kinase domain-containing protein/universal stress protein Neighboring gene K+-transporting ATPase subunit C

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Names
sigma-54 dependent DNA-binding response regulator
YP_012542.1
  • identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    3507257..3508606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_012542.1 sigma-54 dependent DNA-binding response regulator [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_012542.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q725U1
    Conserved Domains (4) summary
    COG2204
    Location:16447
    AtoC; DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms]
    cd00156
    Location:16121
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam00158
    Location:148309
    Sigma54_activat; Sigma-54 interaction domain
    cl22895
    Location:408445
    HTH_8; Bacterial regulatory protein, Fis family
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