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DVU2960 sigma-54 dependent transcriptional regulator [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2796274, updated on 20-Aug-2016

Summary

Gene symbol
DVU2960
Gene description
sigma-54 dependent transcriptional regulator
Locus tag
DVU2960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (3066958..3068382)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene sensor histidine kinase Neighboring gene response regulator

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Names
sigma-54 dependent transcriptional regulator
YP_012171.1
  • identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    3066958..3068382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_012171.1 sigma-54 dependent transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_012171.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q726Z6
    Conserved Domains (5) summary
    cd00130
    Location:29135
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    TIGR02974
    Location:154458
    phageshock_pspF; psp operon transcriptional activator PspF
    pfam00158
    Location:154321
    Sigma54_activat; Sigma-54 interaction domain
    pfam02954
    Location:433471
    HTH_8; Bacterial regulatory protein, Fis family
    pfam13426
    Location:30136
    PAS_9; PAS domain
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