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rpoN RNA polymerase sigma-54 factor [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2796092, updated on 20-Aug-2016

Summary

Gene symbol
rpoN
Gene description
RNA polymerase sigma-54 factor
Locus tag
DVU1628
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (1712453..1713883)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene YrbI family phosphatase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ABC transporter ATP-binding protein Neighboring gene ribosomal subunit interface protein Neighboring gene PTS system transporter subunit IIA

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Two-component system, organism-specific biosystem (from KEGG)
    Two-component system, organism-specific biosystemTwo-component signal transduction systems enable bacteria to sense, respond, and adapt to changes in their environment or in their intracellular state. Each two-component system consists of a sensor ...
  • Two-component system, conserved biosystem (from KEGG)
    Two-component system, conserved biosystemTwo-component signal transduction systems enable bacteria to sense, respond, and adapt to changes in their environment or in their intracellular state. Each two-component system consists of a sensor ...

General protein information

Names
RNA polymerase sigma-54 factor
YP_010847.1
  • identified by similarity to SP:P24255; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    1712453..1713883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_010847.1 RNA polymerase sigma-54 factor [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_010847.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72BK7
    Conserved Domains (4) summary
    PRK05932
    Location:6473
    PRK05932; RNA polymerase factor sigma-54; Reviewed
    pfam00309
    Location:1251
    Sigma54_AID; Sigma-54 factor, Activator interacting domain (AID)
    pfam04552
    Location:314473
    Sigma54_DBD; Sigma-54, DNA binding domain
    pfam04963
    Location:114302
    Sigma54_CBD; Sigma-54 factor, core binding domain
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