Format

Send to:

Choose Destination

DVU0569 sigma-54 dependent transcriptional regulator [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2795894, updated on 20-Aug-2016

Summary

Gene symbol
DVU0569
Gene description
sigma-54 dependent transcriptional regulator
Locus tag
DVU0569
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (634415..635995)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene TerC family protein Neighboring gene tRNA 2-selenouridine synthase Neighboring gene hypothetical protein Neighboring gene alanine dehydrogenase Neighboring gene hypothetical protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Names
sigma-54 dependent transcriptional regulator
YP_009791.1
  • identified by match to protein family HMM PF00158; match to protein family HMM PF01842; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    634415..635995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009791.1 sigma-54 dependent transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_009791.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72EK9
    Conserved Domains (5) summary
    cd02116
    Location:564
    ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
    COG3283
    Location:3522
    TyrR; Transcriptional regulator of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism]
    cd00130
    Location:94189
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    TIGR04381
    Location:476522
    HTH_TypR; TyrR family helix-turn-helix domain
    pfam00158
    Location:210377
    Sigma54_activat; Sigma-54 interaction domain
Support Center