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DVU0539 sigma-54 dependent DNA-binding response regulator [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2795576, updated on 30-Jan-2018

Summary

Gene symbol
DVU0539
Gene description
sigma-54 dependent DNA-binding response regulator
Locus tag
DVU0539
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (610049..611452, complement)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene AP endonuclease Neighboring gene sensor histidine kinase Neighboring gene lipoprotein Neighboring gene universal stress protein Neighboring gene hypothetical protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Names
sigma-54 dependent DNA-binding response regulator
YP_009762.1
  • identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    610049..611452 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009762.1 sigma-54 dependent DNA-binding response regulator [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_009762.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72EN8
    Conserved Domains (4) summary
    COG2204
    Location:8467
    AtoC; DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms]
    cd00156
    Location:10124
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam00158
    Location:149316
    Sigma54_activat; Sigma-54 interaction domain
    pfam02954
    Location:419458
    HTH_8; Bacterial regulatory protein, Fis family
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