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DVU0744 sigma-54 dependent transcriptional regulator/response regulator [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2795260, updated on 20-Aug-2016

Summary

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Gene symbol
DVU0744
Gene description
sigma-54 dependent transcriptional regulator/response regulator
Locus tag
DVU0744
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

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Sequence:
NC_002937.3 (832468..834177)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene sensory box histidine kinase Neighboring gene ABC transporter periplasmic substrate-binding protein Neighboring gene ABC transporter permease Neighboring gene ABC transporter ATP-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002937.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Heidelberg JF, et al. Nat Biotechnol, 2004 May. PMID 15077118

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

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General protein information

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Names
sigma-54 dependent transcriptional regulator/response regulator
YP_009965.1
  • identified by similarity to SP:P14375; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    832468..834177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009965.1 sigma-54 dependent transcriptional regulator/response regulator [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_009965.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72E35
    Conserved Domains (6) summary
    COG2204
    Location:1 → 567
    AtoC; DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms]
    cd00130
    Location:148 → 249
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    cd00156
    Location:5 → 117
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    pfam00158
    Location:267 → 434
    Sigma54_activat; Sigma-54 interaction domain
    pfam02954
    Location:534 → 565
    HTH_8; Bacterial regulatory protein, Fis family
    pfam13426
    Location:148 → 250
    PAS_9; PAS domain
Nucleotide Protein
Heading Accession and Version

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