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rpsD 30S ribosomal protein S4 [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2794623, updated on 29-Jan-2018

Summary

Gene symbol
rpsD
Gene description
30S ribosomal protein S4
Locus tag
DVU1328
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (1405300..1405926)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene 30S ribosomal protein S13 Neighboring gene 30S ribosomal protein S11 Neighboring gene DNA-directed RNA polymerase subunit alpha Neighboring gene 50S ribosomal protein L17 Neighboring gene LysR family transcriptional regulator Neighboring gene selenide, water dikinase, selenocysteine-containing

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General protein information

Names
30S ribosomal protein S4
YP_010547.1
  • primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    1405300..1405926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_010547.1 30S ribosomal protein S4 [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_010547.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q72CF5
    Conserved Domains (3) summary
    PRK05327
    Location:1208
    rpsD; 30S ribosomal protein S4; Validated
    cd00165
    Location:98164
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
    pfam00163
    Location:497
    Ribosomal_S4; Ribosomal protein S4/S9 N-terminal domain
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