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DVU0990 endonuclease III [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2794147, updated on 20-Aug-2016

Summary

Gene symbol
DVU0990
Gene description
endonuclease III
Locus tag
DVU0990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (1084333..1085190)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene carbohydrate kinase Neighboring gene periplasmic divalent cation tolerance protein cutA Neighboring gene hypothetical protein Neighboring gene chemotaxis protein CheV Neighboring gene hypothetical protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...

General protein information

Names
endonuclease III
YP_010211.1
  • identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    1084333..1085190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_010211.1 endonuclease III [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_010211.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72DD9
    Conserved Domains (3) summary
    COG0177
    Location:6213
    Nth; Endonuclease III [Replication, recombination and repair]
    pfam10576
    Location:192208
    EndIII_4Fe-2S; Iron-sulfur binding domain of endonuclease III
    cl23768
    Location:8199
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
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