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DVU0897 RNA modification protein [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2794115, updated on 20-Aug-2016

Summary

Gene symbol
DVU0897
Gene description
RNA modification protein
Locus tag
DVU0897
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (989827..991203)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene recombinase D Neighboring gene NLP/P60 family lipoprotein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene guanylate kinase Neighboring gene orotidine 5'-phosphate decarboxylase

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Names
RNA modification protein
YP_010118.1
  • identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    989827..991203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_010118.1 RNA modification protein [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_010118.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72DN2
    Conserved Domains (3) summary
    cd01335
    Location:167364
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    TIGR01579
    Location:12436
    MiaB-like-C; MiaB-like tRNA modifying enzyme
    pfam00919
    Location:8101
    UPF0004; Uncharacterized protein family UPF0004
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