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DVU3142 sigma-54 dependent transcriptional regulator [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2793992, updated on 20-Aug-2016

Summary

Gene symbol
DVU3142
Gene description
sigma-54 dependent transcriptional regulator
Locus tag
DVU3142
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (3290118..3291821, complement)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene capsular polysaccharide transport protein Neighboring gene lipoprotein Neighboring gene iron-sulfur cluster-binding protein Neighboring gene cytochrome c family protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Names
sigma-54 dependent transcriptional regulator
YP_012352.1
  • identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    3290118..3291821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_012352.1 sigma-54 dependent transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_012352.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q726G6
    Conserved Domains (6) summary
    smart00086
    Location:88124
    PAC; Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
    smart00091
    Location:750
    PAS; PAS domain
    smart00382
    Location:170307
    AAA; ATPases associated with a variety of cellular activities
    pfam00158
    Location:147314
    Sigma54_activat; Sigma-54 interaction domain
    pfam02954
    Location:525557
    HTH_8; Bacterial regulatory protein, Fis family
    pfam13426
    Location:17123
    PAS_9; PAS domain
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