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mfd transcription-repair coupling factor [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2793676, updated on 20-Aug-2016

Summary

Gene symbol
mfd
Gene description
transcription-repair coupling factor
Locus tag
DVU1903
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (1977379..1980861, complement)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase domain-containing protein Neighboring gene hypothetical protein Neighboring gene chemotaxis protein CheW Neighboring gene hypothetical protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...

General protein information

Names
transcription-repair coupling factor
YP_011120.1
  • identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    1977379..1980861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_011120.1 transcription-repair coupling factor [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_011120.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72AT7
    Conserved Domains (5) summary
    smart00982
    Location:10121112
    TRCF; This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli
    smart01058
    Location:489585
    CarD_TRCF; CarD-like/TRCF domain
    COG1197
    Location:201127
    Mfd; Transcription-repair coupling factor (superfamily II helicase) [Replication, recombination and repair, Transcription]
    cd00079
    Location:807927
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:614776
    DEAD; DEAD/DEAH box helicase
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