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nifA-1 nif-specific regulatory protein [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2793521, updated on 20-Aug-2016

Summary

Gene symbol
nifA-1
Gene description
nif-specific regulatory protein
Locus tag
DVU1949
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (2021083..2022672, complement)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate ferredoxin oxidoreductase subunit beta Neighboring gene pyruvate ferredoxin oxidoreductase subunit gamma Neighboring gene hypothetical protein Neighboring gene indolepyruvate ferredoxin oxidoreductase subunit beta Neighboring gene indolepyruvate ferredoxin oxidoreductase subunit alpha

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Two-component system, organism-specific biosystem (from KEGG)
    Two-component system, organism-specific biosystemTwo-component signal transduction systems enable bacteria to sense, respond, and adapt to changes in their environment or in their intracellular state. Each two-component system consists of a sensor ...
  • Two-component system, conserved biosystem (from KEGG)
    Two-component system, conserved biosystemTwo-component signal transduction systems enable bacteria to sense, respond, and adapt to changes in their environment or in their intracellular state. Each two-component system consists of a sensor ...

General protein information

Names
nif-specific regulatory protein
YP_011166.1
  • identified by similarity to SP:P27713; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    2021083..2022672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_011166.1 nif-specific regulatory protein [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_011166.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72AP3
    Conserved Domains (4) summary
    smart00065
    Location:54183
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    COG3604
    Location:19520
    FhlA; Transcriptional regulator containing GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms]
    pfam00158
    Location:210376
    Sigma54_activat; Sigma-54 interaction domain
    pfam02954
    Location:474513
    HTH_8; Bacterial regulatory protein, Fis family
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