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DVU2106 sigma-54 dependent transcriptional regulator [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2793378, updated on 20-Aug-2016

Summary

Gene symbol
DVU2106
Gene description
sigma-54 dependent transcriptional regulator
Locus tag
DVU2106
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (2200357..2201733)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene iron-sulfur cluster-binding/ATPase Neighboring gene iron-sulfur cluster-binding/ATPase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

General protein information

Names
sigma-54 dependent transcriptional regulator
YP_011319.1
  • identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    2200357..2201733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_011319.1 sigma-54 dependent transcriptional regulator [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_011319.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72A91
    Conserved Domains (4) summary
    cd00130
    Location:17118
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    TIGR02974
    Location:140454
    phageshock_pspF; psp operon transcriptional activator PspF
    pfam00158
    Location:137304
    Sigma54_activat; Sigma-54 interaction domain
    pfam13426
    Location:18120
    PAS_9; PAS domain
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