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rpoD RNA polymerase sigma-70 factor [ Desulfovibrio vulgaris str. Hildenborough ]

Gene ID: 2793314, updated on 20-Aug-2016

Summary

Gene symbol
rpoD
Gene description
RNA polymerase sigma-70 factor
Locus tag
DVU1788
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Desulfovibrio vulgaris str. Hildenborough (strain: Hildenborough, old-name: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)
Lineage
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio

Genomic context

Sequence:
NC_002937.3 (1851002..1852774, complement)

NC_002937.3Genomic Context describing neighboring genes Neighboring gene diguanylate cyclase Neighboring gene nuclease domain-containing protein Neighboring gene DNA primase Neighboring gene MutS2 family protein Neighboring gene GatB/Yqey family protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Names
RNA polymerase sigma-70 factor
YP_011006.1
  • identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002937.3 Reference assembly

    Range
    1851002..1852774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_011006.1 RNA polymerase sigma-70 factor [Desulfovibrio vulgaris str. Hildenborough]

    See identical proteins and their annotated locations for YP_011006.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q72B50
    Conserved Domains (6) summary
    PRK05658
    Location:1590
    PRK05658; RNA polymerase sigma factor RpoD; Validated
    pfam00140
    Location:100132
    Sigma70_r1_2; Sigma-70 factor, region 1.2
    pfam03979
    Location:869
    Sigma70_r1_1; Sigma-70 factor, region 1.1
    pfam04539
    Location:435512
    Sigma70_r3; Sigma-70 region 3
    pfam04542
    Location:356426
    Sigma70_r2; Sigma-70 region 2
    pfam04545
    Location:524576
    Sigma70_r4; Sigma-70, region 4
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