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Abcf2 ATP-binding cassette, sub-family F (GCN20), member 2 [ Mus musculus (house mouse) ]

Gene ID: 27407, updated on 3-Jun-2018
Official Symbol
Abcf2provided by MGI
Official Full Name
ATP-binding cassette, sub-family F (GCN20), member 2provided by MGI
Primary source
MGI:MGI:1351657
See related
Ensembl:ENSMUSG00000028953 Vega:OTTMUSG00000053669
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Drr3; E430001O06; 0710005O05Rik
Expression
Ubiquitous expression in testis adult (RPKM 70.0), thymus adult (RPKM 32.4) and 28 other tissues See more
Orthologs
See Abcf2 in Genome Data Viewer
Location:
5; 5 A3
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (24565341..24577467, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (24071159..24083285, complement)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box-containing 10 Neighboring gene RIKEN cDNA 4931409K22 gene Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene Neighboring gene chondroitin polymerizing factor 2 Neighboring gene microRNA 671

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATPase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
mitochondrion HDA PubMed 
Preferred Names
ATP-binding cassette sub-family F member 2
Names
abcf2
developmentally regulated repeat element-containing transcript 3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190443.1NP_001177372.1  ATP-binding cassette sub-family F member 2 isoform 2

    See identical proteins and their annotated locations for NP_001177372.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate in-frame splice site in the 5' coding region compared to variant 3. The resulting isoform (2) has the same N- and C-termini but is 1 aa shorter compared to isoform 1.
    Source sequence(s)
    AK147937, AK151545, BY731788, BY790180
    UniProtKB/Swiss-Prot
    Q99LE6
    Conserved Domains (3) summary
    cd03221
    Location:90306
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:87607
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    pfam12848
    Location:300370
    ABC_tran_Xtn; ABC transporter
  2. NM_001359205.1NP_001346134.1  ATP-binding cassette sub-family F member 2 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longer isoform (1). Variants 1 and 3 both encode the same isoform (1).
    Source sequence(s)
    AC116136
    Conserved Domains (1) summary
    COG0488
    Location:88608
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
  3. NM_013853.2NP_038881.1  ATP-binding cassette sub-family F member 2 isoform 1

    See identical proteins and their annotated locations for NP_038881.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 3. Variants 1 and 3 both encode the same isoform (1).
    Source sequence(s)
    AK147937, AK151545, BY731788
    Consensus CDS
    CCDS19125.1
    UniProtKB/Swiss-Prot
    Q99LE6
    Related
    ENSMUSP00000030795.8, OTTMUSP00000071015, ENSMUST00000030795.9, OTTMUST00000133678
    Conserved Domains (1) summary
    COG0488
    Location:88608
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

    Range
    24565341..24577467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535726.3XP_006535789.1  ATP-binding cassette sub-family F member 2 isoform X1

    UniProtKB/Swiss-Prot
    Q99LE6
    Conserved Domains (1) summary
    COG0488
    Location:88608
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
  2. XM_006535727.3XP_006535790.1  ATP-binding cassette sub-family F member 2 isoform X1

    See identical proteins and their annotated locations for XP_006535790.1

    UniProtKB/Swiss-Prot
    Q99LE6
    Conserved Domains (1) summary
    COG0488
    Location:88608
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
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