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4933408B17Rik RIKEN cDNA 4933408B17 gene [ Mus musculus (house mouse) ]

Gene ID: 271508, updated on 31-Jan-2019

Summary

Official Symbol
4933408B17Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933408B17 geneprovided by MGI
Primary source
MGI:MGI:3045347
See related
Ensembl:ENSMUSG00000049357
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in CNS E14 (RPKM 1.6), CNS E11.5 (RPKM 1.5) and 20 other tissues See more

Genomic context

See 4933408B17Rik in Genome Data Viewer
Location:
18; 18 B1
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (34579579..34599718, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (34739500..34757122, complement)

Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene wingless-type MMTV integration site family, member 8A Neighboring gene NME/NM23 family member 5 Neighboring gene bromodomain containing 8 Neighboring gene predicted gene, 41688 Neighboring gene kinesin family member 20A Neighboring gene CDC23 cell division cycle 23

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC271508

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358301.1NP_001345230.1  uncharacterized protein LOC271508 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC074335
    Conserved Domains (1) summary
    cl02556
    Location:146206
    Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
  2. NM_001358302.1NP_001345231.1  uncharacterized protein LOC271508 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC074335
    Conserved Domains (1) summary
    cd05507
    Location:146229
    Bromo_brd8_like; Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be ...
  3. NM_177773.4NP_808441.2  uncharacterized protein LOC271508 isoform 1

    See identical proteins and their annotated locations for NP_808441.2

    Status: VALIDATED

    Source sequence(s)
    AC074335
    Consensus CDS
    CCDS37758.1
    UniProtKB/TrEMBL
    G3X9B4
    Related
    ENSMUSP00000054234.2, ENSMUST00000056932.8
    Conserved Domains (1) summary
    cd05507
    Location:160259
    Bromo_brd8_like; Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be ...

RNA

  1. NR_152398.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074335
  2. NR_152399.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074335
  3. NR_152400.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074335
  4. NR_152401.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074335

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

    Range
    34579579..34599718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246940.2XP_011245242.1  uncharacterized protein LOC271508 isoform X3

    Conserved Domains (1) summary
    cl02556
    Location:146206
    Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
  2. XM_011246939.2XP_011245241.1  uncharacterized protein LOC271508 isoform X2

    Conserved Domains (1) summary
    cd05507
    Location:146229
    Bromo_brd8_like; Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be ...
  3. XM_011246938.2XP_011245240.1  uncharacterized protein LOC271508 isoform X1

    Conserved Domains (1) summary
    cl02556
    Location:160236
    Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
  4. XM_011246941.2XP_011245243.1  uncharacterized protein LOC271508 isoform X4

    See identical proteins and their annotated locations for XP_011245243.1

    UniProtKB/TrEMBL
    D6RFA1
    Related
    ENSMUSP00000117272.1, ENSMUST00000129566.1
    Conserved Domains (1) summary
    cl02556
    Location:160197
    Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
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