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CIDEB cell death inducing DFFA like effector b [ Homo sapiens (human) ]

Gene ID: 27141, updated on 4-Jul-2021

Summary

Official Symbol
CIDEBprovided by HGNC
Official Full Name
cell death inducing DFFA like effector bprovided by HGNC
Primary source
HGNC:HGNC:1977
See related
Ensembl:ENSG00000136305 MIM:604441
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in liver (RPKM 36.3), duodenum (RPKM 31.8) and 24 other tissues See more
Orthologs
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Genomic context

See CIDEB in Genome Data Viewer
Location:
14q12
Exon count:
8
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (24305187..24311435, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (24774302..24780641, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene TGM1 promoter region Neighboring gene Rab geranylgeranyltransferase subunit alpha Neighboring gene uncharacterized LOC102725044 Neighboring gene dehydrogenase/reductase 1 Neighboring gene nonconserved acetylation island sequence 81 enhancer Neighboring gene NOP9 nucleolar protein Neighboring gene leukotriene B4 receptor 2 Neighboring gene leukotriene B4 receptor Neighboring gene adenylate cyclase 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Genome-wide association analyses of child genotype effects and parent-of-origin effects in specific language impairment.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
cell death activator CIDE-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001318807.3NP_001305736.1  cell death activator CIDE-B isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL096870
    Consensus CDS
    CCDS32056.1
    UniProtKB/Swiss-Prot
    Q9UHD4
    Related
    ENSP00000337731.5, ENST00000336557.9
    Conserved Domains (1) summary
    cd06537
    Location:34114
    CIDE_N_B; CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin ...
  2. NM_001393334.1NP_001380263.1  cell death activator CIDE-B isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL096870
    Conserved Domains (1) summary
    cd06537
    Location:34114
    CIDE_N_B; CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin ...
  3. NM_001393335.1NP_001380264.1  cell death activator CIDE-B isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL096870
    Conserved Domains (1) summary
    cd06537
    Location:34114
    CIDE_N_B; CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin ...
  4. NM_001393336.1NP_001380265.1  cell death activator CIDE-B isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL096870
    Conserved Domains (1) summary
    cd06537
    Location:34114
    CIDE_N_B; CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin ...
  5. NM_001393337.1NP_001380266.1  cell death activator CIDE-B isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL096870
    Conserved Domains (1) summary
    cd06537
    Location:34114
    CIDE_N_B; CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin ...
  6. NM_001393338.1NP_001380267.1  cell death activator CIDE-B isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL096870
    Conserved Domains (1) summary
    cd06537
    Location:34114
    CIDE_N_B; CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin ...
  7. NM_001393339.1NP_001380268.1  cell death activator CIDE-B isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL096870
    Related
    ENSP00000451089.1, ENST00000554411.5
    Conserved Domains (1) summary
    cd06537
    Location:34114
    CIDE_N_B; CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin ...
  8. NM_001393340.1NP_001380269.1  cell death activator CIDE-B isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL096870
    Conserved Domains (1) summary
    cl02541
    Location:3467
    CIDE_N; CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with ...
  9. NM_014430.4NP_055245.2  cell death activator CIDE-B isoform 1

    See identical proteins and their annotated locations for NP_055245.2

    Status: VALIDATED

    Source sequence(s)
    AL096870
    Consensus CDS
    CCDS32056.1
    UniProtKB/Swiss-Prot
    Q9UHD4
    Related
    ENSP00000258807.5, ENST00000258807.5
    Conserved Domains (1) summary
    cd06537
    Location:34114
    CIDE_N_B; CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    24305187..24311435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_018654722.1 Reference GRCh38.p13 PATCHES

    Range
    606165..612413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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