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Vat1l vesicle amine transport protein 1 like [ Mus musculus (house mouse) ]

Gene ID: 270097, updated on 5-Jan-2020

Summary

Official Symbol
Vat1lprovided by MGI
Official Full Name
vesicle amine transport protein 1 likeprovided by MGI
Primary source
MGI:MGI:2142534
See related
Ensembl:ENSMUSG00000046844
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI427515; mKIAA1576; 9430073I07
Expression
Biased expression in CNS E18 (RPKM 30.3), cerebellum adult (RPKM 24.6) and 7 other tissues See more
Orthologs

Genomic context

See Vat1l in Genome Data Viewer
Location:
8; 8 E1
Exon count:
10
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (114205281..114374074)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (116729540..116897970)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 30107 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 7 Neighboring gene predicted gene, 30272 Neighboring gene RIKEN cDNA 4933408N05 gene Neighboring gene predicted gene, 30330 Neighboring gene C-type lectin domain family 3, member a Neighboring gene WW domain-containing oxidoreductase Neighboring gene predicted gene 16116

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
synaptic vesicle membrane protein VAT-1 homolog-like
Names
vesicle amine transport protein 1 homolog-like (T. californica)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173016.3NP_766604.2  synaptic vesicle membrane protein VAT-1 homolog-like

    See identical proteins and their annotated locations for NP_766604.2

    Status: PROVISIONAL

    Source sequence(s)
    AC151980, AC151998
    Consensus CDS
    CCDS22689.1
    UniProtKB/Swiss-Prot
    Q80TB8
    Related
    ENSMUSP00000053431.6, ENSMUST00000049509.6
    Conserved Domains (1) summary
    cd08275
    Location:41378
    MDR3; Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p6 C57BL/6J

    Range
    114205281..114374074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011248394.2XP_011246696.1  synaptic vesicle membrane protein VAT-1 homolog-like isoform X1

    Conserved Domains (2) summary
    cd08275
    Location:41358
    MDR3; Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family
    COG0604
    Location:40366
    Qor; NADPH:quinone reductase or related Zn-dependent oxidoreductase [Energy production and conversion, General function prediction only]
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