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Adamtsl3 ADAMTS-like 3 [ Mus musculus (house mouse) ]

Gene ID: 269959, updated on 31-Jan-2019

Summary

Official Symbol
Adamtsl3provided by MGI
Official Full Name
ADAMTS-like 3provided by MGI
Primary source
MGI:MGI:3028499
See related
Ensembl:ENSMUSG00000070469
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA1233; C130057K09; 9230119C12Rik
Expression
Biased expression in bladder adult (RPKM 4.3), limb E14.5 (RPKM 2.6) and 13 other tissues See more
Orthologs

Genomic context

See Adamtsl3 in Genome Data Viewer
Location:
7; 7 D3
Exon count:
31
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (82335393..82614450)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (89484204..89762958)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 32903 Neighboring gene SH3-domain GRB2-like 3 Neighboring gene stabilizer of axonemal microtubules 2 Neighboring gene elongation factor like GTPase 1 Neighboring gene RIKEN cDNA 4933406J10 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Clone Names

  • KIAA1233

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ADAMTS-like protein 3
Names
a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif like, 3
punctin-2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190374.1NP_001177303.1  ADAMTS-like protein 3

    Status: PROVISIONAL

    Source sequence(s)
    AC110192, AC138270
    Consensus CDS
    CCDS57559.1
    UniProtKB/TrEMBL
    G3UXC7
    Related
    ENSMUSP00000133637.1, ENSMUST00000173287.7
    Conserved Domains (6) summary
    smart00408
    Location:13301388
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:90136
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:13211393
    IG_like; Immunoglobulin like
    pfam08686
    Location:16741704
    PLAC; PLAC (protease and lacunin) domain
    cl11960
    Location:9421006
    Ig; Immunoglobulin domain
    cl15278
    Location:15031558
    TSP_1; Thrombospondin type 1 domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

    Range
    82335393..82614450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006507894.2XP_006507957.1  ADAMTS-like protein 3 isoform X2

    Conserved Domains (2) summary
    smart00209
    Location:90136
    TSP1; Thrombospondin type 1 repeats
    cl11960
    Location:9421006
    Ig; Immunoglobulin domain
  2. XM_006507893.2XP_006507956.1  ADAMTS-like protein 3 isoform X1

    Conserved Domains (5) summary
    smart00408
    Location:13301388
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:90136
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:13211393
    IG_like; Immunoglobulin like
    cl11960
    Location:9421006
    Ig; Immunoglobulin domain
    cl15278
    Location:15031558
    TSP_1; Thrombospondin type 1 domain

RNA

  1. XR_378247.2 RNA Sequence

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