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Gdpgp1 GDP-D-glucose phosphorylase 1 [ Mus musculus (house mouse) ]

Gene ID: 269952, updated on 11-Apr-2024

Summary

Official Symbol
Gdpgp1provided by MGI
Official Full Name
GDP-D-glucose phosphorylase 1provided by MGI
Primary source
MGI:MGI:2443429
See related
Ensembl:ENSMUSG00000050973 AllianceGenome:MGI:2443429
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D330012F22Rik
Summary
Predicted to enable GDP-D-glucose phosphorylase activity. Predicted to be involved in glucose metabolic process. Predicted to be active in cytoplasm. Orthologous to human GDPGP1 (GDP-D-glucose phosphorylase 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in colon adult (RPKM 2.7), large intestine adult (RPKM 2.1) and 28 other tissues See more
Orthologs
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Genomic context

Location:
7 D2; 7 45.56 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (79882641..79891168)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (80232893..80241420)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_19316 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:87337544-87337745 Neighboring gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B Neighboring gene STARR-seq mESC enhancer starr_19318 Neighboring gene STARR-seq mESC enhancer starr_19319 Neighboring gene STARR-seq mESC enhancer starr_19320 Neighboring gene STARR-seq mESC enhancer starr_19323 Neighboring gene STARR-positive B cell enhancer ABC_E10446 Neighboring gene calcium and integrin binding 1 Neighboring gene STARR-positive B cell enhancer ABC_E4940 Neighboring gene tubulin tyrosine ligase-like family, member 13 Neighboring gene neugrin, neurite outgrowth associated

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GDP-D-glucose phosphorylase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables GDP-D-glucose phosphorylase activity ISO
Inferred from Sequence Orthology
more info
 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in glucose metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in glucose metabolic process ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
GDP-D-glucose phosphorylase 1
Names
GDP-D-glucose phosphorylase C15orf58 homolog
NP_848867.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178752.3NP_848867.2  GDP-D-glucose phosphorylase 1

    See identical proteins and their annotated locations for NP_848867.2

    Status: VALIDATED

    Source sequence(s)
    AK084531, AK086166, BB010581
    Consensus CDS
    CCDS39995.1
    UniProtKB/Swiss-Prot
    Q3TLS3, Q3UP89, Q8C3L2, Q8C3Y3, Q8CI49
    Related
    ENSMUSP00000061808.8, ENSMUST00000062915.9
    Conserved Domains (1) summary
    cl14728
    Location:37386
    DUF4922; Domain of unknown function (DUF4922)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    79882641..79891168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)