U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Fbxl4 F-box and leucine-rich repeat protein 4 [ Mus musculus (house mouse) ]

Gene ID: 269514, updated on 24-Jan-2023

Summary

Go to the top of the page Help
Official Symbol
Fbxl4provided by MGI
Official Full Name
F-box and leucine-rich repeat protein 4provided by MGI
Primary source
MGI:MGI:2140367
See related
Ensembl:ENSMUSG00000040410 AllianceGenome:MGI:2140367
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
FBL4; FBL5
Summary
Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in mitochondrial intermembrane space and nuclear speck. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 13. Orthologous to human FBXL4 (F-box and leucine rich repeat protein 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in subcutaneous fat pad adult (RPKM 7.6), genital fat pad adult (RPKM 6.8) and 28 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Fbxl4 in Genome Data Viewer
Location:
4; 4 A3
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (22357526..22434091)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (22357526..22434091)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 42260 Neighboring gene PEST proteolytic signal-containing nuclear protein pseudogene Neighboring gene predicted gene, 24607 Neighboring gene predicted gene, 30731 Neighboring gene POU domain, class 3, transcription factor 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. FBXL4 deficiency increases mitochondrial removal by autophagy. Alsina D, et al. EMBO Mol Med, 2020 Jul 7. PMID 32525278, Free PMC Article
  2. Systematic analysis and nomenclature of mammalian F-box proteins. Jin J, et al. Genes Dev, 2004 Nov 1. PMID 15520277, Free PMC Article
  3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  4. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  5. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. FBXL4 deficiency increases mitochondrial removal by autophagy.
    Title: FBXL4 deficiency increases mitochondrial removal by autophagy.
Submit: New GeneRIF Correction

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (3) 

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • 4732456I21

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
acts_upstream_of_or_within autophagy of mitochondrion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within autophagy of mitochondrion ISO
Inferred from Sequence Orthology
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial intermembrane space ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
F-box/LRR-repeat protein 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172988.4 → NP_766576.1  F-box/LRR-repeat protein 4

    See identical proteins and their annotated locations for NP_766576.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the supported protein.
    Source sequence(s)
    AI836810, AK051429, BY128470
    Consensus CDS
    CCDS18004.1
    UniProtKB/Swiss-Prot
    Q8BH70
    Related
    ENSMUSP00000042219.4, ENSMUST00000039234.10
    Conserved Domains (3) summary
    cd09293
    Location:394 → 601
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:347 → 376
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:280 → 318
    F-box-like

RNA

  1. NR_104378.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' region, compared to variant 1. This variant is represented as non-coding because use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AI836810, AK028786, BY128470
    Related
    ENSMUST00000185029.8

  2. NR_104379.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) includes an additional exon in the 3' region, compared to variant 1. This variant is represented as non-coding because use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AI836810, AK051429, AL772230, BY128470

  3. NR_104380.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site in the central region, compared to variant 1. This variant is represented as non-coding because use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AI836810, AK083661, AL772230, BY128470
    Related
    ENSMUST00000184455.8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    22357526..22434091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006537953.3 → XP_006538016.1  F-box/LRR-repeat protein 4 isoform X1

    See identical proteins and their annotated locations for XP_006538016.1

    UniProtKB/Swiss-Prot
    Q8BH70
    Conserved Domains (3) summary
    cd09293
    Location:394 → 601
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:347 → 376
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:280 → 318
    F-box-like

  2. XM_017320233.3 → XP_017175722.1  F-box/LRR-repeat protein 4 isoform X2

    UniProtKB/TrEMBL
    V9GXH8
    Related
    ENSMUSP00000139158.2, ENSMUST00000184582.2
    Conserved Domains (3) summary
    cd09293
    Location:394 → 558
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:347 → 376
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:280 → 318
    F-box-like

RNA

  1. XR_004941910.1 RNA Sequence

  2. XR_881066.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BH70.1 GenPept UniProtKB/Swiss-Prot:Q8BH70

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous