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Vsnl1 visinin-like 1 [ Mus musculus (house mouse) ]

Gene ID: 26950, updated on 27-Jan-2018

Summary

Official Symbol
Vsnl1provided by MGI
Official Full Name
visinin-like 1provided by MGI
Primary source
MGI:MGI:1349453
See related
Ensembl:ENSMUSG00000054459
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
VILIP; Vnsl1
Expression
Biased expression in cortex adult (RPKM 134.2), cerebellum adult (RPKM 127.1) and 3 other tissues See more
Orthologs

Genomic context

See Vsnl1 in Genome Data Viewer
Location:
12; 12 A1.1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (11325245..11436649, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (11332051..11443455, complement)

Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene GEN1, Holliday junction 5' flap endonuclease Neighboring gene structural maintenance of chromosomes 6 Neighboring gene microRNA 7675 Neighboring gene RIKEN cDNA 4930511A02 gene Neighboring gene RAD51 associated protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
visinin-like protein 1
Names
NVL-1
NVP-1
neural visinin-like protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_012038.4NP_036168.1  visinin-like protein 1

    See identical proteins and their annotated locations for NP_036168.1

    Status: VALIDATED

    Source sequence(s)
    AK144454, BC046226, BE949795, BY264558
    Consensus CDS
    CCDS25816.1
    UniProtKB/Swiss-Prot
    P62761
    UniProtKB/TrEMBL
    Q4W4C9
    Related
    ENSMUSP00000072145.5, ENSMUST00000072299.6
    Conserved Domains (1) summary
    COG5126
    Location:15181
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

    Range
    11325245..11436649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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