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Bahcc1 BAH domain and coiled-coil containing 1 [ Mus musculus (house mouse) ]

Gene ID: 268515, updated on 26-Sep-2022

Summary

Official Symbol
Bahcc1provided by MGI
Official Full Name
BAH domain and coiled-coil containing 1provided by MGI
Primary source
MGI:MGI:2679272
See related
Ensembl:ENSMUSG00000039741 AllianceGenome:MGI:2679272
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
B930044J06
Summary
Predicted to enable chromatin binding activity. Is expressed in central nervous system and retina. Orthologous to human BAHCC1 (BAH domain and coiled-coil containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 8.0), CNS E14 (RPKM 5.4) and 27 other tissues See more
Orthologs
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Genomic context

See Bahcc1 in Genome Data Viewer
Location:
11; 11 E2
Exon count:
33
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (120123696..120183123)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (120232870..120292297)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene 9734 Neighboring gene regulator of early neurogenesis 1 Neighboring gene RIKEN cDNA 2900052L18 gene Neighboring gene predicted gene 11772 Neighboring gene VISTA enhancer mm1481 Neighboring gene microRNA 6935 Neighboring gene actin, gamma, cytoplasmic 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Clone Names

  • KIAA1447, MGC79150

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
BAH and coiled-coil domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347621.2NP_001334550.1  BAH and coiled-coil domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AL928567
    Consensus CDS
    CCDS83943.1
    UniProtKB/Swiss-Prot
    Q3UHR0, Q80UX2
    Related
    ENSMUSP00000112827.2, ENSMUST00000122148.8
    Conserved Domains (2) summary
    cd04714
    Location:25162635
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cl07283
    Location:19842036
    Tudor_3; DNA repair protein Crb2 Tudor domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    120123696..120183123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011249048.3XP_011247350.1  BAH and coiled-coil domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011247350.1

    Conserved Domains (2) summary
    cd04714
    Location:25172680
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cd20470
    Location:19752042
    Tudor_BAHCC1; Tudor domain found in BAH and coiled-coil domain-containing protein 1 (BAHCC1) and similar proteins
  2. XM_017314567.2XP_017170056.1  BAH and coiled-coil domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    cd04714
    Location:25172636
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cl07283
    Location:19852037
    Tudor_3; DNA repair protein Crb2 Tudor domain
  3. XM_017314566.2XP_017170055.1  BAH and coiled-coil domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    cd04714
    Location:25162679
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cl07283
    Location:19842036
    Tudor_3; DNA repair protein Crb2 Tudor domain
  4. XM_036156725.1XP_036012618.1  BAH and coiled-coil domain-containing protein 1 isoform X5

  5. XM_030246038.1XP_030101898.1  BAH and coiled-coil domain-containing protein 1 isoform X1

    Conserved Domains (2) summary
    cd04714
    Location:25172680
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cd20470
    Location:19752042
    Tudor_BAHCC1; Tudor domain found in BAH and coiled-coil domain-containing protein 1 (BAHCC1) and similar proteins
  6. XM_011249053.3XP_011247355.1  BAH and coiled-coil domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011247355.1

    Conserved Domains (2) summary
    cd04714
    Location:25172680
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cd20470
    Location:19752042
    Tudor_BAHCC1; Tudor domain found in BAH and coiled-coil domain-containing protein 1 (BAHCC1) and similar proteins
  7. XM_011249051.2XP_011247353.1  BAH and coiled-coil domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011247353.1

    Conserved Domains (2) summary
    cd04714
    Location:25172680
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cd20470
    Location:19752042
    Tudor_BAHCC1; Tudor domain found in BAH and coiled-coil domain-containing protein 1 (BAHCC1) and similar proteins
  8. XM_036156723.1XP_036012616.1  BAH and coiled-coil domain-containing protein 1 isoform X1

    Conserved Domains (2) summary
    cd04714
    Location:25172680
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cd20470
    Location:19752042
    Tudor_BAHCC1; Tudor domain found in BAH and coiled-coil domain-containing protein 1 (BAHCC1) and similar proteins
  9. XM_011249054.4XP_011247356.1  BAH and coiled-coil domain-containing protein 1 isoform X4

    See identical proteins and their annotated locations for XP_011247356.1

    UniProtKB/Swiss-Prot
    Q3UHR0, Q80UX2
    Related
    ENSMUSP00000112784.2, ENSMUST00000118987.2
    Conserved Domains (2) summary
    cd04714
    Location:25162635
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cl07283
    Location:19842036
    Tudor_3; DNA repair protein Crb2 Tudor domain
  10. XM_011249049.4XP_011247351.1  BAH and coiled-coil domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011247351.1

    Conserved Domains (2) summary
    cd04714
    Location:25172680
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cd20470
    Location:19752042
    Tudor_BAHCC1; Tudor domain found in BAH and coiled-coil domain-containing protein 1 (BAHCC1) and similar proteins
  11. XM_011249050.4XP_011247352.1  BAH and coiled-coil domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011247352.1

    Conserved Domains (2) summary
    cd04714
    Location:25172680
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cd20470
    Location:19752042
    Tudor_BAHCC1; Tudor domain found in BAH and coiled-coil domain-containing protein 1 (BAHCC1) and similar proteins
  12. XM_011249052.4XP_011247354.1  BAH and coiled-coil domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011247354.1

    Conserved Domains (2) summary
    cd04714
    Location:25172680
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cd20470
    Location:19752042
    Tudor_BAHCC1; Tudor domain found in BAH and coiled-coil domain-containing protein 1 (BAHCC1) and similar proteins

RNA

  1. XR_001780012.2 RNA Sequence

  2. XR_003949454.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_198423.4: Suppressed sequence

    Description
    NM_198423.4: This RefSeq was removed because currently there is insufficient support for the transcript.