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RNU4-2 RNA, U4 small nuclear 2 [ Homo sapiens (human) ]

Gene ID: 26834, updated on 10-Oct-2023

Summary

Official Symbol
RNU4-2provided by HGNC
Official Full Name
RNA, U4 small nuclear 2provided by HGNC
Primary source
HGNC:HGNC:10193
See related
Ensembl:ENSG00000202538 AllianceGenome:HGNC:10193
Gene type
snRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U4A; U4b; U4c; RNU4C; RNU4B1; RNU4-1B
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Genomic context

See RNU4-2 in Genome Data Viewer
Location:
12q24.23
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (120291763..120291903, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (120278941..120279081, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (120729566..120729706, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene paxillin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7137 Neighboring gene ribosomal protein S20 pseudogene 31 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:120697989-120698555 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4945 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:120717966-120718466 Neighboring gene hESC enhancers GRCh37_chr12:120727716-120728708 and GRCh37_chr12:120728709-120729700 Neighboring gene NME2 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:120730693-120731684 Neighboring gene RNA, U4 small nuclear 1 Neighboring gene sirtuin 4 Neighboring gene RNA, U6 small nuclear 1088, pseudogene

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • RNA, U4 small nuclear 1B
  • RNA, U4B1 small nuclear
  • RNA, U4C small nuclear

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in formation of quadruple SL/U4/U5/U6 snRNP IEA
Inferred from Electronic Annotation
more info
 
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003137.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    K00473
    Related
    ENST00000365668.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    120291763..120291903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    120278941..120279081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)