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PIPSL PIP5K1A and PSMD4 like (pseudogene) [ Homo sapiens (human) ]

Gene ID: 266971, updated on 8-Aug-2021

Summary

Official Symbol
PIPSLprovided by HGNC
Official Full Name
PIP5K1A and PSMD4 like (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:23733
See related
Ensembl:ENSG00000180764
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PSMD4P2; PIP5K1L1; PIP5K1P3; bA429H9.1
Summary
This locus is a transcribed pseudogene with similarity to two adjacent chromosome 1 loci: phosphatidylinositol-4-phosphate 5-kinase, type I, alpha (PIP5K1A, GeneID 8394) and proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 (PSMD4, GeneID 5710). The pseudogene is believed to have occurred from L1 retrotransposition into chromosome 10 of a read-through transcript between the two adjacent loci. Evidence of transcription has been found (PubMed IDs: 16344562 and 17623810), but the latter publication found no evidence that the predicted protein is translated. The NCBI RefSeq Project therefore continues to treat this as a transcribed pseudogene. [provided by RefSeq, Jan 2009]
Annotation information
Note: This locus is a transcribed pseudogene with similarity to two adjacent chromosome 1 loci: phosphatidylinositol-4-phosphate 5-kinase, type I, alpha (PIP5K1A, GeneID 8394) and proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 (PSMD4, GeneID 5710). The pseudogene is believed to have occurred from L1 retrotransposition into chromosome 10 of a read-through transcript between the two adjacent loci. Evidence of transcription has been found (PubMed IDs: 16344562 and 17623810), but the latter publication found no evidence that the predicted protein is translated. The NCBI RefSeq Project therefore continues to treat this as a transcribed pseudogene. [13 Feb 2013]
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Genomic context

See PIPSL in Genome Data Viewer
Location:
10q23.33
Exon count:
1
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (93958140..93961915, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (95717897..95721672, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene RAB11A, member RAS oncogene family pseudogene 1 Neighboring gene solute carrier family 35 member G1 Neighboring gene uncharacterized LOC105378438 Neighboring gene phospholipase C epsilon 1 Neighboring gene RNY4 pseudogene 26

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • PIP5K1A-PSMD4
  • phosphatidylinositol-4-phosphate 5-kinase, type I, alpha pseudogene
  • phosphatidylinositol-4-phosphate 5-kinase, type I-like 1
  • proteasome (prosome, macropain) 26S subunit, non-ATPase, 4, pseudogene 2
  • proteasome 26S non-ATPase subunit 4 pseudogene
  • putative PIP5K1A and PSMD4-like protein

Clone Names

  • FLJ33990, MGC87444

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables phosphatidylinositol phosphate kinase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002319.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365510
    Related
    ENST00000480546.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    93958140..93961915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002395.1: Suppressed sequence

    Description
    NG_002395.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene and is now represented by NR_002319.
  2. NG_006440.1: Suppressed sequence

    Description
    NG_006440.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
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