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Lgsn lengsin, lens protein with glutamine synthetase domain [ Mus musculus (house mouse) ]

Gene ID: 266744, updated on 31-Jan-2019

Summary

Official Symbol
Lgsnprovided by MGI
Official Full Name
lengsin, lens protein with glutamine synthetase domainprovided by MGI
Primary source
MGI:MGI:2672844
See related
Ensembl:ENSMUSG00000050217
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Lgs; Gluld1; lengsin
Expression
Restricted expression toward testis adult (RPKM 5.5) See more
Orthologs

Genomic context

See Lgsn in Genome Data Viewer
Location:
1; 1 B
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (31176435..31204725)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (31233280..31261570)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene 28644 Neighboring gene predicted gene 29669 Neighboring gene RIKEN cDNA 4931428L18 gene Neighboring gene protein kinase inhibitor, gamma pseudogene Neighboring gene PIH1 domain containing 3 Neighboring gene THO complex 4 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
NOT glutamate-ammonia ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
NOT glutamine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nitrogen compound metabolic process IEA
Inferred from Electronic Annotation
more info
 
NOT nitrogen utilization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
lengsin
Names
glutamate-ammonia ligase (glutamine synthase) domain containing 1
glutamate-ammonia ligase (glutamine synthetase) domain containing 1
glutamate-ammonia ligase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153601.1NP_705829.1  lengsin

    See identical proteins and their annotated locations for NP_705829.1

    Status: PROVISIONAL

    Source sequence(s)
    AF545851
    Consensus CDS
    CCDS14859.1
    UniProtKB/Swiss-Prot
    Q8CIX8
    Related
    ENSMUSP00000059871.7, ENSMUST00000062560.13
    Conserved Domains (3) summary
    COG0174
    Location:130547
    GlnA; Glutamine synthetase [Amino acid transport and metabolism]
    pfam00120
    Location:237561
    Gln-synt_C; Glutamine synthetase, catalytic domain
    pfam03951
    Location:140225
    Gln-synt_N; Glutamine synthetase, beta-Grasp domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

    Range
    31176435..31204725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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