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FBXL3 F-box and leucine rich repeat protein 3 [ Homo sapiens (human) ]

Gene ID: 26224, updated on 3-May-2020

Summary

Official Symbol
FBXL3provided by HGNC
Official Full Name
F-box and leucine rich repeat protein 3provided by HGNC
Primary source
HGNC:HGNC:13599
See related
Ensembl:ENSG00000005812 MIM:605653
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FBL3; FBL3A; FBXL3A; IDDSFAS
Summary
This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbls class and, in addition to an F-box, contains several tandem leucine-rich repeats and is localized in the nucleus. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in thyroid (RPKM 28.0), fat (RPKM 26.4) and 25 other tissues See more
Orthologs

Genomic context

See FBXL3 in Genome Data Viewer
Location:
13q22.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (76992597..77027164, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (77579389..77601331, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L7 pseudogene 44 Neighboring gene DEAH-box helicase 9 pseudogene 1 Neighboring gene CLN5 intracellular trafficking protein Neighboring gene MYC binding protein 2 Neighboring gene MYCBP2 antisense RNA 1 Neighboring gene uncharacterized LOC107984564

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Mental retardation, short stature, facial anomalies, and joint dislocations
MedGen: C1853507 OMIM: 606220 GeneReviews: Not available
not available

NHGRI GWAS Catalog

Description
Cross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette's Syndrome and OCD.
NHGRI GWA Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
contributes_to ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
PubMed 
ubiquitin-protein transferase activity NAS
Non-traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
G2/M transition of mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
entrainment of circadian clock by photoperiod IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
entrainment of circadian clock by photoperiod ISS
Inferred from Sequence or Structural Similarity
more info
 
post-translational protein modification TAS
Traceable Author Statement
more info
 
protein destabilization ISS
Inferred from Sequence or Structural Similarity
more info
 
protein polyubiquitination TAS
Traceable Author Statement
more info
 
protein ubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
 
protein ubiquitination NAS
Non-traceable Author Statement
more info
PubMed 
regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
rhythmic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF ubiquitin ligase complex IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol ISS
Inferred from Sequence or Structural Similarity
more info
 
cytosol TAS
Traceable Author Statement
more info
 
nuclear body IDA
Inferred from Direct Assay
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
ubiquitin ligase complex NAS
Non-traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
F-box/LRR-repeat protein 3
Names
F-box and leucine-rich repeat protein 3A
F-box protein Fbl3a
F-box/LRR-repeat protein 3A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_012158.4NP_036290.1  F-box/LRR-repeat protein 3

    See identical proteins and their annotated locations for NP_036290.1

    Status: REVIEWED

    Source sequence(s)
    AC001226
    Consensus CDS
    CCDS9457.1
    UniProtKB/Swiss-Prot
    Q9UKT7
    Related
    ENSP00000347834.5, ENST00000355619.10
    Conserved Domains (2) summary
    sd00034
    Location:174199
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:3677
    F-box-like; F-box-like

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    76992597..77027164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017020538.2XP_016876027.1  F-box/LRR-repeat protein 3 isoform X3

  2. XM_005266336.1XP_005266393.1  F-box/LRR-repeat protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005266393.1

    UniProtKB/Swiss-Prot
    Q9UKT7
    Conserved Domains (2) summary
    sd00034
    Location:174199
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:3677
    F-box-like; F-box-like
  3. XM_005266337.3XP_005266394.1  F-box/LRR-repeat protein 3 isoform X2

    Conserved Domains (2) summary
    cd09293
    Location:175256
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:2247
    LRR_AMN1; leucine-rich repeat [structural motif]
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