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DGCR5 DiGeorge syndrome critical region gene 5 [ Homo sapiens (human) ]

Gene ID: 26220, updated on 23-Nov-2021

Summary

Official Symbol
DGCR5provided by HGNC
Official Full Name
DiGeorge syndrome critical region gene 5provided by HGNC
Primary source
HGNC:HGNC:16757
See related
Ensembl:ENSG00000273032 MIM:618040
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DGCR9; DGS-A; DGS-B; DGCR10; LINC00037; POM121L5P; NCRNA00037
Expression
Biased expression in brain (RPKM 4.8), adrenal (RPKM 1.0) and 5 other tissues See more
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Genomic context

See DGCR5 in Genome Data Viewer
Location:
22q11.21
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (18970498..19031242)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (18958011..19018755)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene proline dehydrogenase 1 Neighboring gene uncharacterized LOC122455341 Neighboring gene human-specific endogenous retroviral insert PRODH enhancer Neighboring gene family with sequence similarity 246 member C (gene/pseudogene) Neighboring gene CA15 pseudogene 1 Neighboring gene DiGeorge syndrome critical region gene 2 Neighboring gene DiGeorge syndrome critical region gene 11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
An atlas of genetic influences on human blood metabolites.
GeneReviews: Not available
Human metabolic individuality in biomedical and pharmaceutical research.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • DiGeorge syndrome critical region gene 10 (non-protein coding)
  • DiGeorge syndrome critical region gene 5 (non-protein coding)
  • DiGeorge syndrome critical region gene 9 (non-protein coding)
  • DiGeorge syndrome gene A
  • DiGeorge syndrome gene B
  • cadherin EGF LAG seven-pass G-type receptor 1 pseudogene
  • long intergenic non-protein coding RNA 37

Clone Names

  • KIAA1647, MGC45713, AC000095.10, AC000095.11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002733.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC007326, AI301969, BF313645
    Related
    ENST00000421572.2
  2. NR_024159.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC036821
  3. NR_026651.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC000095, BM681417, BU584104, L77559
  4. NR_045121.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC007326, BG699848, BM681341
  5. NR_110533.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 3' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC000095, AC007326, X91348
    Related
    ENST00000440005.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    18970498..19031242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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