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LINC00588 long intergenic non-protein coding RNA 588 [ Homo sapiens (human) ]

Gene ID: 26138, updated on 10-Dec-2024

Summary

Official Symbol
LINC00588provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 588provided by HGNC
Primary source
HGNC:HGNC:24494
See related
AllianceGenome:HGNC:24494
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C8orf71
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

See LINC00588 in Genome Data Viewer
Location:
8q12.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (57279543..57284731)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (57701083..57706270)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (58192102..58197290)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58172381-58172962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:58173547-58174128 Neighboring gene uncharacterized LOC286177 Neighboring gene MPRA-validated peak7033 silencer Neighboring gene RNA, U6 small nuclear 596, pseudogene Neighboring gene Sharpr-MPRA regulatory region 3559 Neighboring gene uncharacterized LOC101929488

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026772.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AL080200

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    57279543..57284731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187566.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    117957..123145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    57701083..57706270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_015643.1: Suppressed sequence

    Description
    NM_015643.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.