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SUSD5 sushi domain containing 5 [ Homo sapiens (human) ]

Gene ID: 26032, updated on 13-Mar-2020

Summary

Official Symbol
SUSD5provided by HGNC
Official Full Name
sushi domain containing 5provided by HGNC
Primary source
HGNC:HGNC:29061
See related
Ensembl:ENSG00000173705
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 4.0), gall bladder (RPKM 3.2) and 19 other tissues See more
Orthologs

Genomic context

See SUSD5 in Genome Data Viewer
Location:
3p22.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (33150041..33218952, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (33191537..33260707, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 296, pseudogene Neighboring gene cartilage associated protein Neighboring gene F-box and leucine rich repeat protein 2 Neighboring gene RNA, U7 small nuclear 110 pseudogene Neighboring gene upstream binding protein 1 Neighboring gene RNA, 5S ribosomal pseudogene 128

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA0527

Gene Ontology Provided by GOA

Function Evidence Code Pubs
hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
Notch signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sushi domain-containing protein 5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015551.2NP_056366.1  sushi domain-containing protein 5 precursor

    See identical proteins and their annotated locations for NP_056366.1

    Status: VALIDATED

    Source sequence(s)
    AB011099, AC123900
    Consensus CDS
    CCDS46787.1
    UniProtKB/Swiss-Prot
    O60279
    Related
    ENSP00000308727.3, ENST00000309558.8
    Conserved Domains (1) summary
    cd03521
    Location:39133
    Link_domain_KIAA0527_like; Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    33150041..33218952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005265034.3XP_005265091.1  sushi domain-containing protein 5 isoform X1

    Conserved Domains (1) summary
    cd03521
    Location:39133
    Link_domain_KIAA0527_like; Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was ...
  2. XM_017006137.2XP_016861626.1  sushi domain-containing protein 5 isoform X2

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