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C2CD2 C2 calcium dependent domain containing 2 [ Homo sapiens (human) ]

Gene ID: 25966, updated on 15-Jun-2019

Summary

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Official Symbol
C2CD2provided by HGNC
Official Full Name
C2 calcium dependent domain containing 2provided by HGNC
Primary source
HGNC:HGNC:1266
See related
Ensembl:ENSG00000157617 MIM:617581
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TMEM24L; C21orf25; C21orf258
Expression
Broad expression in adrenal (RPKM 38.9), fat (RPKM 23.4) and 21 other tissues See more
Orthologs
mouse all

Genomic context

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See C2CD2 in Genome Data Viewer
Location:
21q22.3
Exon count:
17
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 21 NC_000021.9 (41885110..41953968, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (43305219..43374066, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724800 Neighboring gene PR/SET domain 15 Neighboring gene small nucleolar RNA, H/ACA box 91 Neighboring gene zinc finger and BTB domain containing 21 Neighboring gene ZNF295 antisense RNA 1 Neighboring gene uncharacterized LOC107985502

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Identification and characterization of TMEM24 family genes in silico. Katoh M, et al. Int J Oncol, 2004 Sep. PMID 15289880
  2. Genome-wide association study of ancestry-specific TB risk in the South African Coloured population. Chimusa ER, et al. Hum Mol Genet, 2014 Feb 1. PMID 24057671, Free PMC Article
  3. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. Warnatz HJ, et al. Nucleic Acids Res, 2010 Oct. PMID 20494980, Free PMC Article
  4. Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. Hu YH, et al. BMC Genomics, 2006 Jun 16. PMID 16780588, Free PMC Article
  5. The DNA sequence of human chromosome 21. Hattori M, et al. Nature, 2000 May 18. PMID 10830953

See all (10) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  1. The C2CD2/C21orf25 promoter is activated by Trichostatin A (TSA) treatment and by serum depletion according to promoter reporter assays in HEK 293 cells.
    Title: Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

NHGRI GWAS Catalog

Description
Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.
NHGRI GWA Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC71445, DKFZp686O198, DKFZp586F0422

Gene Ontology Provided by GOA

Component Evidence Code Pubs
cytosol HDA PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
  
nucleus HDA PubMed 

General protein information

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Preferred Names
C2 domain-containing protein 2
Names
TMEM24 related geme
transmembrane protein 24-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015500.2 → NP_056315.1  C2 domain-containing protein 2 isoform 1

    See identical proteins and their annotated locations for NP_056315.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AB047784, AP001619
    Consensus CDS
    CCDS42933.1
    UniProtKB/Swiss-Prot
    Q9Y426
    Related
    ENSP00000369853.3, ENST00000380486.4
    Conserved Domains (1) summary
    cd08678
    Location:265 → 391
    C2_C21orf25-like; C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

  2. NM_199050.3 → NP_950251.1  C2 domain-containing protein 2 isoform 2

    See identical proteins and their annotated locations for NP_950251.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AI143200, AL833323, AP001619
    Consensus CDS
    CCDS13677.1
    UniProtKB/Swiss-Prot
    Q9Y426
    Related
    ENSP00000329302.7, ENST00000329623.11
    Conserved Domains (1) summary
    cd08678
    Location:110 → 236
    C2_C21orf25-like; C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    41885110..41954018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011529522.2 → XP_011527824.1  C2 domain-containing protein 2 isoform X1

    Conserved Domains (1) summary
    cd08678
    Location:276 → 402
    C2_C21orf25-like; C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

  2. XM_017028315.1 → XP_016883804.1  C2 domain-containing protein 2 isoform X5

  3. XM_011529523.2 → XP_011527825.1  C2 domain-containing protein 2 isoform X2

    Conserved Domains (1) summary
    cd08678
    Location:185 → 311
    C2_C21orf25-like; C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

  4. XM_005261109.4 → XP_005261166.1  C2 domain-containing protein 2 isoform X3

    See identical proteins and their annotated locations for XP_005261166.1

    UniProtKB/Swiss-Prot
    Q9Y426
    Conserved Domains (1) summary
    cd08678
    Location:110 → 236
    C2_C21orf25-like; C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

  5. XM_011529524.3 → XP_011527826.1  C2 domain-containing protein 2 isoform X4

    Conserved Domains (1) summary
    cd08678
    Location:276 → 402
    C2_C21orf25-like; C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9Y426.2 GenPept UniProtKB/Swiss-Prot:Q9Y426

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