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MDS2 myelodysplastic syndrome 2 translocation associated [ Homo sapiens (human) ]

Gene ID: 259283, updated on 13-May-2022

Summary

Official Symbol
MDS2provided by HGNC
Official Full Name
myelodysplastic syndrome 2 translocation associatedprovided by HGNC
Primary source
HGNC:HGNC:29633
See related
Ensembl:ENSG00000197880 MIM:607305; AllianceGenome:HGNC:29633
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Located in extracellular space. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in lymph node (RPKM 1.2), thyroid (RPKM 0.9) and 6 other tissues See more
Orthologs
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Genomic context

See MDS2 in Genome Data Viewer
Location:
1p36.11
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (23627334..23640568)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (23461911..23475166)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (23953824..23967058)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903876 Neighboring gene uncharacterized LOC107984928 Neighboring gene inhibitor of DNA binding 3 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 48 Neighboring gene ribosomal protein L11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Homology

Other Names

  • myelodysplastic syndrome 2 translocation-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_167901.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000
    Related
    ENST00000374555.7
  2. NR_167902.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000
    Related
    ENST00000686180.1
  3. NR_167903.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000
  4. NR_167904.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000
  5. NR_167905.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000
  6. NR_167906.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000
  7. NR_167907.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000
    Related
    ENST00000686679.1
  8. NR_167908.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000
  9. NR_167909.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000
  10. NR_167910.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451000

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    23627334..23640568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    23461911..23475166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001348075.2: Suppressed sequence

    Description
    NM_001348075.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_148895.1: Suppressed sequence

    Description
    NM_148895.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.