Format

Send to:

Choose Destination

rfc3 replication factor C (activator 1) 3 [ Danio rerio (zebrafish) ]

Gene ID: 259256, updated on 13-Jun-2020

Summary

Official Symbol
rfc3provided by ZNC
Official Full Name
replication factor C (activator 1) 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-020809-3
See related
Ensembl:ENSDARG00000055969
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb275
Orthologs

Genomic context

See rfc3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (34024254..34033447, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (34080394..34089587, complement)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (35052536..35061729, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene zygote arrest 1-like Neighboring gene klotho Neighboring gene serine protease HTRA1A-like Neighboring gene uncharacterized LOC108179159

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
contributes_to DNA clamp loader activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
DNA repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA replication IEA
Inferred from Electronic Annotation
more info
 
DNA-dependent DNA replication IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
DNA replication factor C complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
replication factor C subunit 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201457.1NP_958865.1  replication factor C subunit 3

    See identical proteins and their annotated locations for NP_958865.1

    Status: PROVISIONAL

    Source sequence(s)
    BC042327
    UniProtKB/TrEMBL
    Q8AW06
    Related
    ENSDARP00000154572.1, ENSDART00000180734.1
    Conserved Domains (3) summary
    cd00009
    Location:21179
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    PRK00440
    Location:3345
    rfc; replication factor C small subunit; Reviewed
    pfam08542
    Location:250337
    Rep_fac_C; Replication factor C C-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    34024254..34033447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394793.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    448061..457064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center