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LOC259244 alpha-2u globulin PGCL3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 259244, updated on 8-Dec-2018

Summary

Symbol
LOC259244provided by RGD
Full Name
alpha-2u globulin PGCL3provided by RGD
Primary source
RGD:708501
See related
Ensembl:ENSRNOG00000009273
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
member of a highly homologous multigene family; expression is tissue and sex specific [RGD, Feb 2006]
Expression
Restricted expression toward (RPKM 8971.1) See more

Genomic context

See LOC259244 in Genome Data Viewer
Location:
5q24
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (77245206..77248563, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (81374724..81378081, complement)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene sorting nexin family member 30 Neighboring gene solute carrier family 46, member 2 Neighboring gene Zfp37 pseudogene Neighboring gene major urinary protein 4

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
small molecule binding IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_147212.1NP_671745.1  alpha-2u globulin PGCL3 precursor

    See identical proteins and their annotated locations for NP_671745.1

    Status: PROVISIONAL

    Source sequence(s)
    AB039824
    UniProtKB/TrEMBL
    Q9JJI3
    Related
    ENSRNOP00000044277.3, ENSRNOT00000052243.5
    Conserved Domains (1) summary
    pfam00061
    Location:35174
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    77245206..77248563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    73712675..73716031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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