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PART1 prostate androgen-regulated transcript 1 [ Homo sapiens (human) ]

Gene ID: 25859, updated on 28-Aug-2022

Summary

Official Symbol
PART1provided by HGNC
Official Full Name
prostate androgen-regulated transcript 1provided by HGNC
Primary source
HGNC:HGNC:17263
See related
Ensembl:ENSG00000152931 MIM:604991; AllianceGenome:HGNC:17263
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00206
Summary
This gene is induced by androgen in prostate adenocarcinoma cells. Multiple alternatively transcript variants have been described for this gene, none of which are predicted to encode a protein product. [provided by RefSeq, Sep 2009]
Expression
Biased expression in brain (RPKM 4.1), prostate (RPKM 3.9) and 5 other tissues See more
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Genomic context

See PART1 in Genome Data Viewer
Location:
5q12.1
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (60487713..60547657)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (61306025..61365980)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (59783540..59843484)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 4D Neighboring gene Sharpr-MPRA regulatory region 9229 Neighboring gene ribosomal protein L31 pseudogene 8 Neighboring gene SET pseudogene 21 Neighboring gene Sharpr-MPRA regulatory region 1909 Neighboring gene DEP domain containing 1B Neighboring gene calcium binding protein 39 pseudogene 1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • prostate androgen-regulated transcript 1 (non-protein coding)
  • prostate-specific and androgen-regulated cDNA 14D7 protein

Clone Names

  • DKFZp586D0823

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024617.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) contains different segments for its 3' end, compared to variant 3.
    Source sequence(s)
    AK094518, AK312071, BC069304
  2. NR_028508.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains a different segment for its 3' end, compared to variant 3.
    Source sequence(s)
    AF163475, BQ898163
    Related
    ENST00000515734.2
  3. NR_028509.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript.
    Source sequence(s)
    AC016591, AF070547, AF163475
    Related
    ENST00000661844.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    60487713..60547657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    61306025..61365980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039499.1: Suppressed sequence

    Description
    NM_001039499.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
  2. NM_001040639.1: Suppressed sequence

    Description
    NM_001040639.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.