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PART1 prostate androgen-regulated transcript 1 [ Homo sapiens (human) ]

Gene ID: 25859, updated on 12-Oct-2019

Summary

Official Symbol
PART1provided by HGNC
Official Full Name
prostate androgen-regulated transcript 1provided by HGNC
Primary source
HGNC:HGNC:17263
See related
Ensembl:ENSG00000152931 MIM:604991
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00206
Summary
This gene is induced by androgen in prostate adenocarcinoma cells. Multiple alternatively transcript variants have been described for this gene, none of which are predicted to encode a protein product. [provided by RefSeq, Sep 2009]
Expression
Biased expression in brain (RPKM 4.1), prostate (RPKM 3.9) and 5 other tissues See more

Genomic context

See PART1 in Genome Data Viewer
Location:
5q12.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (60487713..60547657)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (59783540..59843484)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 4D Neighboring gene ribosomal protein L31 pseudogene 8 Neighboring gene SET pseudogene 21 Neighboring gene DEP domain containing 1B Neighboring gene calcium binding protein 39 pseudogene 1 Neighboring gene keratin 8 pseudogene 31

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Other Names

  • prostate androgen-regulated transcript 1 (non-protein coding)
  • prostate-specific and androgen-regulated cDNA 14D7 protein

Clone Names

  • DKFZp586D0823

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024617.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) contains different segments for its 3' end, compared to variant 3.
    Source sequence(s)
    AK094518, AK312071, BC069304
  2. NR_028508.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains a different segment for its 3' end, compared to variant 3.
    Source sequence(s)
    AF163475, BQ898163
    Related
    ENST00000515734.2
  3. NR_028509.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript.
    Source sequence(s)
    AC016591, AF070547, AF163475
    Related
    ENST00000661844.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    60487713..60547657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039499.1: Suppressed sequence

    Description
    NM_001039499.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
  2. NM_001040639.1: Suppressed sequence

    Description
    NM_001040639.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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