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TNFAIP8 TNF alpha induced protein 8 [ Homo sapiens (human) ]

Gene ID: 25816, updated on 4-Dec-2023

Summary

Official Symbol
TNFAIP8provided by HGNC
Official Full Name
TNF alpha induced protein 8provided by HGNC
Primary source
HGNC:HGNC:17260
See related
Ensembl:ENSG00000145779 MIM:612111; AllianceGenome:HGNC:17260
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NDED; GG2-1; SCCS2; SCC-S2; MDC-3.13
Summary
Enables cysteine-type endopeptidase inhibitor activity involved in apoptotic process. Involved in positive regulation of apoptotic process. Located in cytoplasm and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in lymph node (RPKM 31.1), fat (RPKM 24.0) and 19 other tissues See more
Orthologs
NEW
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Try the new Transcript table

Genomic context

See TNFAIP8 in Genome Data Viewer
Location:
5q23.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (119268759..119399688)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (119789607..119920525)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (118604454..118735383)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Dmx like 1 Neighboring gene RNA, U6 small nuclear 701, pseudogene Neighboring gene microRNA 5706 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:118591447-118592003 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22961 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16264 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22962 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22963 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22964 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22965 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:118609555-118610054 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22967 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22968 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22969 Neighboring gene RNA, 7SL, cytoplasmic 174, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:118664591-118665278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22971 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22972 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22973 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22975 Neighboring gene uncharacterized LOC102723444 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22974 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22976 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22977 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22978 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16265 Neighboring gene Sharpr-MPRA regulatory region 6110 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22979 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22980 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22981 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22982 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22983 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:118726761-118726918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22984 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22985 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22986 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:118737716-118738284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:118740092-118740592 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22987 Neighboring gene Sharpr-MPRA regulatory region 10011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22989 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:118794469-118795121 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:118797267-118797484 Neighboring gene RNA, 5S ribosomal pseudogene 190 Neighboring gene uncharacterized LOC124901215 Neighboring gene hydroxysteroid 17-beta dehydrogenase 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.
EBI GWAS Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp120 env HIV-1 gp120 upregulates the expression of tumor necrosis factor, alpha-induced protein 8 (TNFAIP8) in human B cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of apoptotic process TAS
Traceable Author Statement
more info
PubMed 
involved_in positive regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
tumor necrosis factor alpha-induced protein 8
Names
NF-kappa-B-inducible DED-containing protein
TNF-induced protein GG2-1
head and neck tumor and metastasis-related protein
tumor necrosis factor, alpha induced protein 8

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077654.3NP_001071122.1  tumor necrosis factor alpha-induced protein 8 isoform b

    See identical proteins and their annotated locations for NP_001071122.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5'-terminal exon and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (b) has a shorter and distinct N-terminus, compared to isoform a.
    Source sequence(s)
    AC035144, BC007014, BP274520, CB241243
    Consensus CDS
    CCDS47257.1
    UniProtKB/TrEMBL
    B3KUI2
    Related
    ENSP00000274456.6, ENST00000274456.6
    Conserved Domains (1) summary
    pfam05527
    Location:7185
    DUF758; Domain of unknown function (DUF758)
  2. NM_001286813.2NP_001273742.1  tumor necrosis factor alpha-induced protein 8 isoform a

    See identical proteins and their annotated locations for NP_001273742.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Both variants 1 and 3 encode the same isoform (a).
    Source sequence(s)
    AC035144, AK097284, BC007014, CB241243
    Consensus CDS
    CCDS47258.1
    UniProtKB/Swiss-Prot
    B3KMH1, B3KMI2, B7Z713, O95379, Q9P1Q1, Q9UER5, Q9UP47
    UniProtKB/TrEMBL
    B3KUI2
    Related
    ENSP00000421848.1, ENST00000503646.1
    Conserved Domains (1) summary
    pfam05527
    Location:17195
    DUF758; Domain of unknown function (DUF758)
  3. NM_001286814.1NP_001273743.1  tumor necrosis factor alpha-induced protein 8 isoform c

    See identical proteins and their annotated locations for NP_001273743.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) contains an alternate 5'-terminal exon and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (c) has a longer and distinct N-terminus, compared to isoform a.
    Source sequence(s)
    AK301281, BC007014, CB241243, DC391074
    Consensus CDS
    CCDS68933.1
    UniProtKB/TrEMBL
    B3KUI2
    Related
    ENSP00000427424.1, ENST00000513374.1
    Conserved Domains (1) summary
    pfam05527
    Location:29207
    DUF758; Domain of unknown function (DUF758)
  4. NM_001286815.2NP_001273744.1  tumor necrosis factor alpha-induced protein 8 isoform d

    See identical proteins and their annotated locations for NP_001273744.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (d) has a shorter N-terminus, compared to isoform a. Both variants 5 and 6 encode the same isoform.
    Source sequence(s)
    AC035144, BC007014, BP274520, CB241243, DB114867
    UniProtKB/TrEMBL
    B3KUI2
    Conserved Domains (1) summary
    pfam05527
    Location:1163
    DUF758; Domain of unknown function (DUF758)
  5. NM_001286817.2NP_001273746.1  tumor necrosis factor alpha-induced protein 8 isoform d

    See identical proteins and their annotated locations for NP_001273746.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (d) has a shorter N-terminus, compared to isoform a. Both variants 5 and 6 encode the same isoform.
    Source sequence(s)
    AC035144, BC007014, BP274520, CB241243, DB124282
    UniProtKB/TrEMBL
    B3KUI2
    Conserved Domains (1) summary
    pfam05527
    Location:1163
    DUF758; Domain of unknown function (DUF758)
  6. NM_014350.4NP_055165.2  tumor necrosis factor alpha-induced protein 8 isoform a

    See identical proteins and their annotated locations for NP_055165.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform a. Both variant 1 and 3 encode the same isoform.
    Source sequence(s)
    AC035144, BC007014, CB241243
    Consensus CDS
    CCDS47258.1
    UniProtKB/Swiss-Prot
    B3KMH1, B3KMI2, B7Z713, O95379, Q9P1Q1, Q9UER5, Q9UP47
    UniProtKB/TrEMBL
    B3KUI2
    Related
    ENSP00000422245.1, ENST00000504771.3
    Conserved Domains (1) summary
    pfam05527
    Location:17195
    DUF758; Domain of unknown function (DUF758)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    119268759..119399688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017009328.2XP_016864817.1  tumor necrosis factor alpha-induced protein 8 isoform X2

    UniProtKB/TrEMBL
    B3KUI2
    Conserved Domains (1) summary
    pfam05527
    Location:1163
    DUF758; Domain of unknown function (DUF758)
  2. XM_047417082.1XP_047273038.1  tumor necrosis factor alpha-induced protein 8 isoform X2

    UniProtKB/TrEMBL
    B3KUI2
  3. XM_017009327.2XP_016864816.1  tumor necrosis factor alpha-induced protein 8 isoform X1

    UniProtKB/TrEMBL
    B3KUI2
  4. XM_047417081.1XP_047273037.1  tumor necrosis factor alpha-induced protein 8 isoform X2

    UniProtKB/TrEMBL
    B3KUI2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    119789607..119920525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054352324.1XP_054208299.1  tumor necrosis factor alpha-induced protein 8 isoform X2

    UniProtKB/TrEMBL
    B3KUI2
  2. XM_054352326.1XP_054208301.1  tumor necrosis factor alpha-induced protein 8 isoform X2

    UniProtKB/TrEMBL
    B3KUI2
  3. XM_054352323.1XP_054208298.1  tumor necrosis factor alpha-induced protein 8 isoform X1

    UniProtKB/TrEMBL
    B3KUI2
  4. XM_054352325.1XP_054208300.1  tumor necrosis factor alpha-induced protein 8 isoform X2

    UniProtKB/TrEMBL
    B3KUI2