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DSCR9 Down syndrome critical region 9 [ Homo sapiens (human) ]

Gene ID: 257203, updated on 13-May-2022

Summary

Official Symbol
DSCR9provided by HGNC
Official Full Name
Down syndrome critical region 9provided by HGNC
Primary source
HGNC:HGNC:16301
See related
Ensembl:ENSG00000230366 AllianceGenome:HGNC:16301
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00038
Expression
Biased expression in testis (RPKM 2.8) and brain (RPKM 0.2) See more
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Genomic context

See DSCR9 in Genome Data Viewer
Location:
21q22.13
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (37208503..37221736)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (35590724..35603961)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (38580804..38594037)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 3 Neighboring gene GFI1 motif-containing MPRA enhancer 103 Neighboring gene TTC3 antisense RNA 1 Neighboring gene RNA, 7SL, cytoplasmic 678, pseudogene Neighboring gene VPS26 endosomal protein sorting factor C Neighboring gene uncharacterized LOC124905018

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

EBI GWAS Catalog

Description
Digital quantification of human eye color highlights genetic association of three new loci.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • Down syndrome critical region 9 (non-protein coding)
  • Down syndrome critical region gene 9 (non-protein coding)

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026719.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001432, BC066653
    Related
    ENST00000454482.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    37208503..37221736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    35590724..35603961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_148675.3: Suppressed sequence

    Description
    NM_148675.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.