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NEGR1 neuronal growth regulator 1 [ Homo sapiens (human) ]

Gene ID: 257194, updated on 15-Apr-2019

Summary

Official Symbol
NEGR1provided by HGNC
Official Full Name
neuronal growth regulator 1provided by HGNC
Primary source
HGNC:HGNC:17302
See related
Ensembl:ENSG00000172260 MIM:613173
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Ntra; KILON; IGLON4; DMML2433
Expression
Broad expression in brain (RPKM 13.7), fat (RPKM 5.3) and 18 other tissues See more
Orthologs

Genomic context

See NEGR1 in Genome Data Viewer
Location:
1p31.1
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (71402942..72282594, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (71868625..72748533, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378795 Neighboring gene ZRANB2 antisense RNA 2 (head to head) Neighboring gene zinc finger RANBP2-type containing 2 Neighboring gene microRNA 186 Neighboring gene NEGR1 intronic transcript 1 Neighboring gene uncharacterized LOC105378797 Neighboring gene ribosomal protein L31 pseudogene 12 Neighboring gene uncharacterized LOC105378796 Neighboring gene GDP dissociation inhibitor 2 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.
NHGRI GWA Catalog
Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.
NHGRI GWA Catalog
Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.
NHGRI GWA Catalog
Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.
NHGRI GWA Catalog
Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.
NHGRI GWA Catalog
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
NHGRI GWA Catalog
Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.
NHGRI GWA Catalog
Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
NHGRI GWA Catalog
Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.
NHGRI GWA Catalog
Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
NHGRI GWA Catalog
Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.
NHGRI GWA Catalog

Pathways from BioSystems

  • Cell adhesion molecules (CAMs), organism-specific biosystem (from KEGG)
    Cell adhesion molecules (CAMs), organism-specific biosystemCell adhesion molecules are (glyco)proteins expressed on the cell surface and play a critical role in a wide array of biologic processes that include hemostasis, the immune response, inflammation, em...
  • Cell adhesion molecules (CAMs), conserved biosystem (from KEGG)
    Cell adhesion molecules (CAMs), conserved biosystemCell adhesion molecules are (glyco)proteins expressed on the cell surface and play a critical role in a wide array of biologic processes that include hemostasis, the immune response, inflammation, em...
  • Metabolism of proteins, organism-specific biosystem (from REACTOME)
    Metabolism of proteins, organism-specific biosystemProtein metabolism comprises the pathways of translation, post-translational modification and protein folding.
  • Post-translational modification: synthesis of GPI-anchored proteins, organism-specific biosystem (from REACTOME)
    Post-translational modification: synthesis of GPI-anchored proteins, organism-specific biosystemGlycosylphosphatidyl inositol (GPI) acts as a membrane anchor for many cell surface proteins. GPI is synthesized in the endoplasmic reticulum. In humans, a single pathway consisting of eleven reactio...
  • Post-translational protein modification, organism-specific biosystem (from REACTOME)
    Post-translational protein modification, organism-specific biosystemAfter translation, many newly formed proteins undergo further covalent modifications that alter their functional properties and that are essentially irreversible under physiological conditions in the...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC46680

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 
feeding behavior IEA
Inferred from Electronic Annotation
more info
 
locomotory behavior IEA
Inferred from Electronic Annotation
more info
 
positive regulation of neuron projection development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
anchored component of membrane IEA
Inferred from Electronic Annotation
more info
 
extracellular region TAS
Traceable Author Statement
more info
 
plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
neuronal growth regulator 1
Names
IgLON family member 4
a kindred of IgLON
neurotractin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173808.3NP_776169.2  neuronal growth regulator 1 precursor

    See identical proteins and their annotated locations for NP_776169.2

    Status: VALIDATED

    Source sequence(s)
    AL354949, AL356600, AL359821, AL627317, AL645724
    Consensus CDS
    CCDS661.1
    UniProtKB/Swiss-Prot
    Q7Z3B1
    Related
    ENSP00000350364.4, ENST00000357731.10
    Conserved Domains (4) summary
    cd00096
    Location:243309
    Ig; Immunoglobulin domain
    smart00408
    Location:152210
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:231312
    IG_like; Immunoglobulin like
    cl11960
    Location:44135
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p12 Primary Assembly

    Range
    71402942..72282594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011541200.3XP_011539502.1  neuronal growth regulator 1 isoform X1

    Conserved Domains (4) summary
    cd00096
    Location:243309
    Ig; Immunoglobulin domain
    smart00408
    Location:152210
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:231312
    IG_like; Immunoglobulin like
    cl11960
    Location:44135
    Ig; Immunoglobulin domain
  2. XM_017000961.2XP_016856450.1  neuronal growth regulator 1 isoform X3

  3. XM_011541201.3XP_011539503.1  neuronal growth regulator 1 isoform X2

    See identical proteins and their annotated locations for XP_011539503.1

    Conserved Domains (3) summary
    smart00408
    Location:152210
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:145221
    IG_like; Immunoglobulin like
    cl11960
    Location:44135
    Ig; Immunoglobulin domain
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