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CATSPERD cation channel sperm associated auxiliary subunit delta [ Homo sapiens (human) ]

Gene ID: 257062, updated on 17-Jun-2019

Summary

Official Symbol
CATSPERDprovided by HGNC
Official Full Name
cation channel sperm associated auxiliary subunit deltaprovided by HGNC
Primary source
HGNC:HGNC:28598
See related
Ensembl:ENSG00000174898 MIM:617490
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TMEM146
Expression
Restricted expression toward testis (RPKM 5.1) See more
Orthologs

Genomic context

See CATSPERD in Genome Data Viewer
Location:
19p13.3
Exon count:
25
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (5720156..5778734)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (5720688..5778742)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene hydroxysteroid 11-beta dehydrogenase 1 like Neighboring gene ribosomal protein L36 Neighboring gene lon peptidase 1, mitochondrial Neighboring gene proline rich 22 Neighboring gene dihydrouridine synthase 3 like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from BioSystems

  • Fertilization, organism-specific biosystem (from REACTOME)
    Fertilization, organism-specific biosystemMammalian fertilization comprises sperm migration through the female reproductive tract, biochemical and morphological changes to sperm, and sperm-egg interaction in the oviduct. Although the broad c...
  • Reproduction, organism-specific biosystem (from REACTOME)
    Reproduction, organism-specific biosystemHuman reproduction mixes the genomes of two individuals creating a new organism. The offspring individuals produced by sexual reproduction differ from their parents and from their siblings. Reproduct...
  • Sperm Motility And Taxes, organism-specific biosystem (from REACTOME)
    Sperm Motility And Taxes, organism-specific biosystemA series of receptor signaling pathways potentially govern chemical communication between sperm and egg, chemotactically guiding incoming sperm towards the oocyte. Though several substances are confi...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC39581

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
flagellated sperm motility ISS
Inferred from Sequence or Structural Similarity
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
response to progesterone TAS
Traceable Author Statement
more info
 
sperm capacitation ISS
Inferred from Sequence or Structural Similarity
more info
 
sperm-egg recognition TAS
Traceable Author Statement
more info
 
spermatogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
CatSper complex ISS
Inferred from Sequence or Structural Similarity
more info
 
plasma membrane TAS
Traceable Author Statement
more info
 
sperm principal piece ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
cation channel sperm-associated protein subunit delta
Names
catSper-delta
catSperdelta
catsper channel auxiliary subunit delta
transmembrane protein 146

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152784.4NP_689997.3  cation channel sperm-associated protein subunit delta precursor

    See identical proteins and their annotated locations for NP_689997.3

    Status: VALIDATED

    Source sequence(s)
    AC011499, AK128088, BC043005
    Consensus CDS
    CCDS12149.2
    UniProtKB/Swiss-Prot
    Q86XM0
    Related
    ENSP00000371037.3, ENST00000381624.4
    Conserved Domains (1) summary
    pfam15020
    Location:41766
    CATSPERD; Cation channel sperm-associated protein subunit delta

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    5720156..5778734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011527885.3XP_011526187.1  cation channel sperm-associated protein subunit delta isoform X1

    Conserved Domains (1) summary
    pfam15020
    Location:41832
    CATSPERD; Cation channel sperm-associated protein subunit delta
  2. XM_011527887.3XP_011526189.1  cation channel sperm-associated protein subunit delta isoform X4

    Conserved Domains (1) summary
    pfam15020
    Location:41789
    CATSPERD; Cation channel sperm-associated protein subunit delta
  3. XM_011527886.3XP_011526188.1  cation channel sperm-associated protein subunit delta isoform X2

    Conserved Domains (1) summary
    pfam15020
    Location:41814
    CATSPERD; Cation channel sperm-associated protein subunit delta
  4. XM_017026564.2XP_016882053.1  cation channel sperm-associated protein subunit delta isoform X3

  5. XM_017026566.2XP_016882055.1  cation channel sperm-associated protein subunit delta isoform X6

  6. XM_011527889.3XP_011526191.1  cation channel sperm-associated protein subunit delta isoform X8

    Conserved Domains (1) summary
    pfam15020
    Location:41588
    CATSPERD; Cation channel sperm-associated protein subunit delta
  7. XM_011527890.3XP_011526192.1  cation channel sperm-associated protein subunit delta isoform X9

    Conserved Domains (1) summary
    pfam15020
    Location:41545
    CATSPERD; Cation channel sperm-associated protein subunit delta
  8. XM_011527888.3XP_011526190.1  cation channel sperm-associated protein subunit delta isoform X7

    Conserved Domains (1) summary
    pfam15020
    Location:41647
    CATSPERD; Cation channel sperm-associated protein subunit delta
  9. XM_017026565.1XP_016882054.1  cation channel sperm-associated protein subunit delta isoform X5

  10. XM_011527891.1XP_011526193.1  cation channel sperm-associated protein subunit delta isoform X10

    Conserved Domains (1) summary
    pfam15020
    Location:1490
    CATSPERD; Cation channel sperm-associated protein subunit delta
  11. XM_011527892.1XP_011526194.1  cation channel sperm-associated protein subunit delta isoform X11

    Conserved Domains (1) summary
    pfam15020
    Location:1433
    CATSPERD; Cation channel sperm-associated protein subunit delta
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