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CATSPERE catsper channel auxiliary subunit epsilon [ Homo sapiens (human) ]

Gene ID: 257044, updated on 23-Nov-2021

Summary

Official Symbol
CATSPEREprovided by HGNC
Official Full Name
catsper channel auxiliary subunit epsilonprovided by HGNC
Primary source
HGNC:HGNC:28491
See related
Ensembl:ENSG00000179397 MIM:617510
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf101; C10orf101
Expression
Biased expression in testis (RPKM 9.2) and bone marrow (RPKM 0.5) See more
Orthologs
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Genomic context

See CATSPERE in Genome Data Viewer
Location:
1q44
Exon count:
31
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (244452013..244640504)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (244624575..244803806)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene TGFB induced factor homeobox 2 pseudogene 1 Neighboring gene uncharacterized LOC105373264 Neighboring gene adenylosuccinate synthase 2 Neighboring gene CYCS pseudogene 5 Neighboring gene desumoylating isopeptidase 2 Neighboring gene ribosomal protein L37 pseudogene 8 Neighboring gene uncharacterized LOC122455338

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC33370

Gene Ontology Provided by GOA

Component Evidence Code Pubs
part_of CatSper complex ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in sperm principal piece IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
cation channel sperm-associated protein subunit epsilon
Names
catSper-epsilon
catSperepsilon
uncharacterized protein C1orf101

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029082.1 RefSeqGene

    Range
    4903..184134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001130957.2NP_001124429.1  cation channel sperm-associated protein subunit epsilon isoform 1 precursor

    See identical proteins and their annotated locations for NP_001124429.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC099757, AL591594, BC028392, BC032859, BX648685, DB462258
    Consensus CDS
    CCDS44340.1
    UniProtKB/Swiss-Prot
    Q5SY80
    Related
    ENSP00000355492.4, ENST00000366534.9
    Conserved Domains (1) summary
    pfam15020
    Location:699902
    CATSPERD; Cation channel sperm-associated protein subunit delta
  2. NM_001242340.2NP_001229269.1  cation channel sperm-associated protein subunit epsilon isoform 3

    See identical proteins and their annotated locations for NP_001229269.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks several exons in the 5' coding region compared to variant 1. This results in translation initiation from an in-frame downstream AUG, and an isoform (3) with a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AC099757, AK303059, AL591594, BC032859, DB462258
    Consensus CDS
    CCDS55693.1
    UniProtKB/Swiss-Prot
    Q5SY80
    Related
    ENSP00000355489.3, ENST00000366531.7
    Conserved Domains (1) summary
    pfam15020
    Location:548751
    CATSPERD; Cation channel sperm-associated protein subunit delta
  3. NM_173807.5NP_776168.1  cation channel sperm-associated protein subunit epsilon isoform 2 precursor

    See identical proteins and their annotated locations for NP_776168.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the 3' coding region compared to variant 1. This results in a frame-shift, and a shorter isoform (2) with a distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC099757, AL591594, BC032859, BX648685, DB462258
    Consensus CDS
    CCDS1625.1
    UniProtKB/Swiss-Prot
    Q5SY80
    Related
    ENSP00000355491.4, ENST00000366533.8
    Conserved Domains (1) summary
    pfam15020
    Location:699816
    CATSPERD; Cation channel sperm-associated protein subunit delta

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    244452013..244640504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011544142.3XP_011542444.1  cation channel sperm-associated protein subunit epsilon isoform X2

    See identical proteins and their annotated locations for XP_011542444.1

    UniProtKB/Swiss-Prot
    Q5SY80
    Conserved Domains (1) summary
    pfam15020
    Location:548751
    CATSPERD; Cation channel sperm-associated protein subunit delta
  2. XM_017000946.2XP_016856435.1  cation channel sperm-associated protein subunit epsilon isoform X2

    UniProtKB/Swiss-Prot
    Q5SY80
    Conserved Domains (1) summary
    pfam15020
    Location:548751
    CATSPERD; Cation channel sperm-associated protein subunit delta
  3. XM_017000953.1XP_016856442.1  cation channel sperm-associated protein subunit epsilon isoform X11

  4. XM_017000947.1XP_016856436.1  cation channel sperm-associated protein subunit epsilon isoform X6

  5. XM_017000951.1XP_016856440.1  cation channel sperm-associated protein subunit epsilon isoform X8

  6. XM_017000943.1XP_016856432.1  cation channel sperm-associated protein subunit epsilon isoform X3

  7. XM_017000952.1XP_016856441.1  cation channel sperm-associated protein subunit epsilon isoform X10

  8. XM_011544138.2XP_011542440.1  cation channel sperm-associated protein subunit epsilon isoform X1

    Conserved Domains (1) summary
    pfam15020
    Location:706909
    CATSPERD; Cation channel sperm-associated protein subunit delta
  9. XM_017000950.1XP_016856439.1  cation channel sperm-associated protein subunit epsilon isoform X2

    UniProtKB/Swiss-Prot
    Q5SY80
    Conserved Domains (1) summary
    pfam15020
    Location:548751
    CATSPERD; Cation channel sperm-associated protein subunit delta
  10. XM_017000949.1XP_016856438.1  cation channel sperm-associated protein subunit epsilon isoform X2

    UniProtKB/Swiss-Prot
    Q5SY80
    Conserved Domains (1) summary
    pfam15020
    Location:548751
    CATSPERD; Cation channel sperm-associated protein subunit delta
  11. XM_017000944.1XP_016856433.1  cation channel sperm-associated protein subunit epsilon isoform X4

    Related
    ENSP00000395796.1, ENST00000428042.1
  12. XM_017000945.2XP_016856434.1  cation channel sperm-associated protein subunit epsilon isoform X5

  13. XM_011544144.2XP_011542446.1  cation channel sperm-associated protein subunit epsilon isoform X7

    See identical proteins and their annotated locations for XP_011542446.1

    Conserved Domains (1) summary
    pfam15020
    Location:557760
    CATSPERD; Cation channel sperm-associated protein subunit delta
  14. XM_011544139.2XP_011542441.1  cation channel sperm-associated protein subunit epsilon isoform X2

    See identical proteins and their annotated locations for XP_011542441.1

    UniProtKB/Swiss-Prot
    Q5SY80
    Conserved Domains (1) summary
    pfam15020
    Location:548751
    CATSPERD; Cation channel sperm-associated protein subunit delta
  15. XM_011544145.2XP_011542447.1  cation channel sperm-associated protein subunit epsilon isoform X7

    See identical proteins and their annotated locations for XP_011542447.1

    Conserved Domains (1) summary
    pfam15020
    Location:557760
    CATSPERD; Cation channel sperm-associated protein subunit delta
  16. XM_011544151.2XP_011542453.1  cation channel sperm-associated protein subunit epsilon isoform X9

    See identical proteins and their annotated locations for XP_011542453.1

    Conserved Domains (1) summary
    pfam15020
    Location:513716
    CATSPERD; Cation channel sperm-associated protein subunit delta
  17. XM_011544149.2XP_011542451.1  cation channel sperm-associated protein subunit epsilon isoform X2

    See identical proteins and their annotated locations for XP_011542451.1

    UniProtKB/Swiss-Prot
    Q5SY80
    Conserved Domains (1) summary
    pfam15020
    Location:548751
    CATSPERD; Cation channel sperm-associated protein subunit delta
  18. XM_017000948.2XP_016856437.1  cation channel sperm-associated protein subunit epsilon isoform X7

    Conserved Domains (1) summary
    pfam15020
    Location:557760
    CATSPERD; Cation channel sperm-associated protein subunit delta
  19. XM_024446278.1XP_024302046.1  cation channel sperm-associated protein subunit epsilon isoform X2

    Conserved Domains (1) summary
    pfam15020
    Location:548751
    CATSPERD; Cation channel sperm-associated protein subunit delta

RNA

  1. XR_001737097.1 RNA Sequence

  2. XR_001737098.1 RNA Sequence

  3. XR_001737100.1 RNA Sequence

  4. XR_001737095.1 RNA Sequence

  5. XR_001737096.1 RNA Sequence

  6. XR_001737099.1 RNA Sequence

  7. XR_001737101.1 RNA Sequence

  8. XR_002956220.1 RNA Sequence

  9. XR_001737102.1 RNA Sequence

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