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TINCR TINCR ubiquitin domain containing [ Homo sapiens (human) ]

Gene ID: 257000, updated on 9-Aug-2021

Summary

Official Symbol
TINCRprovided by HGNC
Official Full Name
TINCR ubiquitin domain containingprovided by HGNC
Primary source
HGNC:HGNC:14607
See related
Ensembl:ENSG00000223573 MIM:615241
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PLAC2; LINC00036; NCRNA00036; onco-lncRNA-16
Summary
This gene produces a spliced long non-coding RNA that binds RNAs. This transcript interacts with staufen-1 protein to regulate the stability of mRNAs for genes involved in the differentiation of epidermal tissue. Variation in this gene may be associated with cancer progression. [provided by RefSeq, Aug 2017]
Expression
Biased expression in skin (RPKM 41.2), placenta (RPKM 9.2) and 1 other tissue See more
Orthologs
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Genomic context

See TINCR in Genome Data Viewer
Location:
19p13.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (5558167..5568034, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (5558178..5568045, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 11104 Neighboring gene zinc and ring finger 4 Neighboring gene Sharpr-MPRA regulatory regions 733 and 12449 Neighboring gene SNRPE pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • long intergenic non-protein coding RNA 36
  • placenta-specific 2 (non-protein coding)
  • terminal differentiation-induced ncRNA
  • tissue differentiation-inducing non-protein coding RNA

Clone Names

  • FLJ90734

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027064.3 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC011533
    Related
    ENST00000448587.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    5558167..5568034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153375.1: Suppressed sequence

    Description
    NM_153375.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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