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TCERG1L transcription elongation regulator 1 like [ Homo sapiens (human) ]

Gene ID: 256536, updated on 13-Mar-2020

Summary

Official Symbol
TCERG1Lprovided by HGNC
Official Full Name
transcription elongation regulator 1 likeprovided by HGNC
Primary source
HGNC:HGNC:23533
See related
Ensembl:ENSG00000176769
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 8.1), ovary (RPKM 1.2) and 2 other tissues See more
Orthologs

Genomic context

See TCERG1L in Genome Data Viewer
Location:
10q26.3
Exon count:
12
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (131092391..131311721, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (132890655..133109984, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene microRNA 378c Neighboring gene uncharacterized LOC107984186 Neighboring gene TCERG1L antisense RNA 1 Neighboring gene uncharacterized LOC105378563 Neighboring gene uncharacterized LOC101927461 Neighboring gene long intergenic non-protein coding RNA 1164

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.
NHGRI GWA Catalog
A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.
NHGRI GWA Catalog
Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.
NHGRI GWA Catalog
Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC126584

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA polymerase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
regulation of nucleic acid-templated transcription IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
transcription elongation regulator 1-like protein
Names
5730476P14Rik

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174937.4NP_777597.2  transcription elongation regulator 1-like protein

    See identical proteins and their annotated locations for NP_777597.2

    Status: VALIDATED

    Source sequence(s)
    AL390203, BC042951, BC101535, BM689725
    Consensus CDS
    CCDS7662.2
    UniProtKB/Swiss-Prot
    Q5VWI1
    Related
    ENSP00000357631.4, ENST00000368642.4
    Conserved Domains (2) summary
    pfam00397
    Location:343370
    WW; WW domain
    pfam01846
    Location:452500
    FF; FF domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    131092391..131311721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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